RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SUMO2P61956 95 aaKnown RBP4.28□□□□□ -1.73
CLIP1-217ENST00000543205 HERV-K104P63124 156 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 SLC35A2P78381 396 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 MRPS11P82912 194 aaKnown RBP4.28□□□□□ -1.73
CLIP1-217ENST00000543205 FOXL1Q12952 345 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 UQCC3Q6UW78 93 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 PRSS48Q7RTY5 328 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF525Q8N782 197 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 OR13C3Q8NGS6 347 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 ITLN1Q8WWA0 313 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 PHYHIPQ92561 330 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 RDH5Q92781 318 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF48Q96MX3 618 aaPredicted RBP4.28□□□□□ -1.73
CLIP1-217ENST00000543205 OR2V2Q96R30 315 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 SSBP3Q9BWW4 388 aaPredicted RBP4.28□□□□□ -1.73
CLIP1-217ENST00000543205 CXXC4Q9H2H0 198 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 ABCB9Q9NP78 766 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 PAK1IP1Q9NWT1 392 aaPredicted RBP4.28□□□□□ -1.73
CLIP1-217ENST00000543205 PTTG2Q9NZH5 202 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 LRRC42Q9Y546 428 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 DMRT1Q9Y5R6 373 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 MPC1Q9Y5U8 109 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 V9GYS6 101 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 PLCE1Q9P212 2302 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 HRNRQ86YZ3 2850 aaPredicted RBP4.27□□□□□ -1.73
CLIP1-217ENST00000543205 AKAP6Q13023 2319 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 IGHV3-64DA0A0J9YX35 117 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 A6NIN4 97 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 OR4C45A6NMZ5 311 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 DHRS7CA6NNS2 312 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 LYNX1G3V0Z9 82 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 MLNRO43193 412 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 MRPS14O60783 128 aaKnown RBP4.27□□□□□ -1.73
CLIP1-217ENST00000543205 NCR1O76036 304 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 NRASP01111 189 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 SMIM18P0DKX4 95 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 LYNX1P0DP58 116 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF20P17024 532 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 CCL1P22362 96 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 COL8A2P25067 703 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 CD80P33681 288 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 CRYBB2P43320 205 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 SLC3A1Q07837 685 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 PRDX4Q13162 271 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 CDK5R1Q15078 307 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 SPHARQ15513 63 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 CLVS2Q5SYC1 327 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 IL17RELQ6ZVW7 336 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 CCL17Q92583 94 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 COQ2Q96H96 371 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 GRAMD2BQ96HH9 432 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 Q96MF0 132 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 DUX5Q96PT3 197 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 MICU1Q9BPX6 476 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 PDCD1LG2Q9BQ51 273 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 RTL8AQ9BWD3 113 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 TREM2Q9NZC2 230 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 HHLA2Q9UM44 414 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 PPP1R3CQ9UQK1 317 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 MED13LQ71F56 2210 aa4.27□□□□□ -1.73
CLIP1-217ENST00000543205 PNMA8CA0A1B0GUJ8 204 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 LRRC30A6NM36 301 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 PPIHO43447 177 aaKnown RBP4.26□□□□□ -1.73
CLIP1-217ENST00000543205 OCM2P0CE71 109 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 OCMP0CE72 109 aaPredicted RBP4.26□□□□□ -1.73
CLIP1-217ENST00000543205 HSMCR30P0CW71 290 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 IRF2P14316 349 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 CD200P41217 278 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 MAP2K4P45985 399 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 TMEM33P57088 247 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 NHLH2Q02577 135 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 ICAM4Q14773 271 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 CEACAM21Q3KPI0 293 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 SPRNQ5BIV9 151 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 XAF1Q6GPH4 301 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 RNASEKQ6P5S7 137 aaKnown RBP4.26□□□□□ -1.73
CLIP1-217ENST00000543205 PEG10Q86TG7 708 aaKnown RBP4.26□□□□□ -1.73
CLIP1-217ENST00000543205 ZFP41Q8N8Y5 198 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF485Q8NCK3 441 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 WFDC11Q8NEX6 87 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 OR11L1Q8NGX0 322 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 C10orf105Q8TEF2 133 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 OR5P3Q8WZ94 311 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 GHSRQ92847 366 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 YIPF5Q969M3 257 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 ERGIC1Q969X5 290 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 FGGYQ96C11 551 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 C10orf35Q96D05 121 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 SMIM19Q96E16 107 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 TIMD4Q96H15 378 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 RNF170Q96K19 258 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 OR5M11Q96RB7 305 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 PPP1R3EQ9H7J1 279 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 SLC7A11Q9UPY5 501 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 RBMX2Q9Y388 322 aaKnown RBP4.26□□□□□ -1.73
CLIP1-217ENST00000543205 SIRT4Q9Y6E7 314 aaPredicted RBP4.26□□□□□ -1.73
CLIP1-217ENST00000543205 USF3Q68DE3 2245 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 TMEM210A6NLX4 147 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 VWC2LB2RUY7 222 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 CLDN25C9JDP6 229 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms