RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ABCA2Q9BZC7 2435 aa14.11□□□□□ -0.15
LIG1-204ENST00000542460 YLPM1P49750 1951 aaKnown RBP14.11□□□□□ -0.15
LIG1-204ENST00000542460 TRGV10A0A0A0MS01 117 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 HPGDSO60760 199 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 MT-ND4P03905 459 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 GNB3P16520 340 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 TRAPPC6BQ86SZ2 158 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 RTN4RL2Q86UN3 420 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 CORO2AQ92828 525 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 RIMS4Q9H426 269 aaPredicted RBP14.1□□□□□ -0.15
LIG1-204ENST00000542460 ONECUT1Q9UBC0 465 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 KCNK7Q9Y2U2 307 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 UBE2J1Q9Y385 318 aaPredicted RBP14.1□□□□□ -0.15
LIG1-204ENST00000542460 KPTNQ9Y664 436 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 SERPINE3A8MV23 424 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 MFNGO00587 321 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 RGS5O15539 181 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 EIF4EP06730 217 aaKnown RBP14.1□□□□□ -0.15
LIG1-204ENST00000542460 ELK1P19419 428 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 CDK2P24941 298 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 ARF6P62330 175 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 ZNF273Q14593 569 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 CDNFQ49AH0 187 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 C1orf122Q6ZSJ8 110 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 KIR3DL3Q8N743 410 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 MCFD2Q8NI22 146 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 DYRK2Q92630 601 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 CYYR1Q96J86 154 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 NXF2Q9GZY0 626 aaKnown RBP14.1□□□□□ -0.15
LIG1-204ENST00000542460 C7orf69Q9H7B7 122 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 ZMAT3Q9HA38 289 aaKnown RBP14.1□□□□□ -0.15
LIG1-204ENST00000542460 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.1□□□□□ -0.15
LIG1-204ENST00000542460 YAE1D1Q9NRH1 226 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 AK3Q9UIJ7 227 aa14.1□□□□□ -0.15
LIG1-204ENST00000542460 NF1P21359 2839 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 TRAV18A0A075B6X5 111 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 MEX3AA1L020 520 aaKnown RBP14.09□□□□□ -0.15
LIG1-204ENST00000542460 A8MV72 311 aaPredicted RBP14.09□□□□□ -0.15
LIG1-204ENST00000542460 M0R1W7 72 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 CTDSP2O14595 271 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 XRCC3O43542 346 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 ZNF728P0DKX0 622 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 MRPS15P82914 257 aaKnown RBP14.09□□□□□ -0.15
LIG1-204ENST00000542460 METTL11BQ5VVY1 283 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 TCF23Q7RTU1 214 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 ZNF714Q96N38 554 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 TMPRSS13Q9BYE2 586 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 C6orf62Q9GZU0 229 aaPredicted RBP14.09□□□□□ -0.15
LIG1-204ENST00000542460 TAS2R3Q9NYW6 316 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 TRAPPC2LQ9UL33 140 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 AUP1Q9Y679 476 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 A3GALT2U3KPV4 340 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 ABCA1O95477 2261 aa14.09□□□□□ -0.15
LIG1-204ENST00000542460 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.08□□□□□ -0.162e-7■■■■□ 22.6
LIG1-204ENST00000542460 CSPG4Q6UVK1 2322 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 hCG_1809904A0A1W2PP81 198 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 A0A1W2PPE2 198 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 A0A1W2PR64 198 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 A0A1W2PRV1 198 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 POM121CA8CG34 1229 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 FAM25AB3EWG3 89 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 FAM25CB3EWG5 89 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 FAM25GB3EWG6 89 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 NAPSAO96009 420 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 GSTP1P09211 210 aaKnown RBP14.08□□□□□ -0.16
LIG1-204ENST00000542460 CCL3L1P16619 93 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 GZMHP20718 246 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 CR1LQ2VPA4 569 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 ZNF260Q3ZCT1 412 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 OLFML2AQ68BL7 652 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 OR13A1Q8NGR1 328 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 OR4K15Q8NH41 348 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 MRPL30Q8TCC3 161 aaKnown RBP14.08□□□□□ -0.16
LIG1-204ENST00000542460 CCDC107Q8WV48 283 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 WDFY2Q96P53 400 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 CMSS1Q9BQ75 279 aaKnown RBP14.08□□□□□ -0.16
LIG1-204ENST00000542460 MMP27Q9H306 513 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 GAL3ST2Q9H3Q3 398 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 GSX1Q9H4S2 264 aaPredicted RBP14.08□□□□□ -0.16
LIG1-204ENST00000542460 ADAM30Q9UKF2 790 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 DOCK11Q5JSL3 2073 aa14.08□□□□□ -0.16
LIG1-204ENST00000542460 C17orf98A8MV24 154 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 TOX4O94842 621 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 CD3GP09693 182 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 GLP1RP43220 463 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 DLX6P56179 175 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 ARFRP1Q13795 201 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 TMEM69Q5SWH9 247 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 HACD4Q5VWC8 232 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 MRGPRDQ8TDS7 321 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 SIRPDQ9H106 197 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 MIXL1Q9H2W2 232 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 CHMP1AQ9HD42 196 aaPredicted RBP14.07□□□□□ -0.16
LIG1-204ENST00000542460 C12orf4Q9NQ89 552 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 ARHGAP32A7KAX9 2087 aa14.07□□□□□ -0.16
LIG1-204ENST00000542460 TRBV6-6A0A0A6YYG2 114 aa14.06□□□□□ -0.16
LIG1-204ENST00000542460 ZNF729A6NN14 1252 aaPredicted RBP14.06□□□□□ -0.16
LIG1-204ENST00000542460 RBP4P02753 201 aa14.06□□□□□ -0.16
LIG1-204ENST00000542460 CGB3P0DN86 165 aa14.06□□□□□ -0.16
LIG1-204ENST00000542460 CGB7P0DN87 165 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms