RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 FABP1P07148 127 aa10.75□□□□□ -0.69
RNF4-222ENST00000541204 EDN3P14138 238 aa10.75□□□□□ -0.69
RNF4-222ENST00000541204 CCL20P78556 96 aa10.75□□□□□ -0.69
RNF4-222ENST00000541204 TRIP6Q15654 476 aaKnown RBP10.75□□□□□ -0.69
RNF4-222ENST00000541204 TMEM42Q69YG0 159 aa10.75□□□□□ -0.69
RNF4-222ENST00000541204 CALHM1Q8IU99 346 aa10.75□□□□□ -0.69
RNF4-222ENST00000541204 OR2C3Q8N628 320 aa10.75□□□□□ -0.69
RNF4-222ENST00000541204 ZNF565Q8N9K5 539 aa10.75□□□□□ -0.69
RNF4-222ENST00000541204 CCDC71LQ8N9Z2 235 aa10.75□□□□□ -0.69
RNF4-222ENST00000541204 ZFP62Q8NB50 900 aaPredicted RBP10.75□□□□□ -0.69
RNF4-222ENST00000541204 GPHA2Q96T91 129 aa10.75□□□□□ -0.69
RNF4-222ENST00000541204 NIT2Q9NQR4 276 aa10.75□□□□□ -0.69
RNF4-222ENST00000541204 SPENQ96T58 3664 aaKnown RBP10.74□□□□□ -0.69
RNF4-222ENST00000541204 C5orf49A4QMS7 147 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 CDRT15L2A8MXV6 281 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 MPPED1O15442 326 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 NPBWR2P48146 333 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 UCP3P55916 312 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 PCBD1P61457 104 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 POLR2GP62487 172 aaKnown RBP eCLIP10.74□□□□□ -0.69
RNF4-222ENST00000541204 RHEBQ15382 184 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 RIPPLY2Q5TAB7 128 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 SLAMF9Q96A28 289 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 METTL1Q9UBP6 276 aaKnown RBP10.74□□□□□ -0.69
RNF4-222ENST00000541204 MRPS18CQ9Y3D5 142 aaKnown RBP10.74□□□□□ -0.69
RNF4-222ENST00000541204 IGSF23A1L1A6 192 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 SP1P08047 785 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 MMP7P09237 267 aaPredicted RBP10.74□□□□□ -0.69
RNF4-222ENST00000541204 OR8U8P0C7N1 319 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 PMELP40967 661 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 FUT6P51993 359 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 RBM11P57052 281 aaKnown RBP10.74□□□□□ -0.69
RNF4-222ENST00000541204 OR2G3Q8NGZ4 309 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 ZNF251Q9BRH9 671 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 MAGT1Q9H0U3 335 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 SEBOXQ9HB31 216 aaPredicted RBP10.74□□□□□ -0.69
RNF4-222ENST00000541204 GSN-AS1Q9NRJ2 163 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 SLC7A11Q9UPY5 501 aa10.74□□□□□ -0.69
RNF4-222ENST00000541204 hCG_38984A0A1B0GV85 526 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 IGHV2-5P01817 119 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 ATP6V0CP27449 155 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 GNRHRP30968 328 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 DAZAP2Q15038 168 aaPredicted RBP10.73□□□□□ -0.69
RNF4-222ENST00000541204 SPIN3Q5JUX0 258 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 SUMF2Q8NBJ7 301 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 DSPP15924 2871 aaKnown RBP10.73□□□□□ -0.69
RNF4-222ENST00000541204 SPAARA0A1B0GVQ0 90 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 ZNF724A8MTY0 619 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 TRDCB7Z8K6 153 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 SLC33A1O00400 549 aaPredicted RBP10.73□□□□□ -0.69
RNF4-222ENST00000541204 TXNL1O43396 289 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 SSSCA1O60232 199 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 FUT3P21217 361 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 NKX2-1P43699 371 aaPredicted RBP10.73□□□□□ -0.69
RNF4-222ENST00000541204 CEBPGP53567 150 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 SOHLH1Q5JUK2 328 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 SLC25A26Q70HW3 274 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 NUFIP2Q7Z417 695 aaKnown RBP10.73□□□□□ -0.69
RNF4-222ENST00000541204 TBC1D26Q86UD7 250 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 MCEMP1Q8IX19 187 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 ZNF611Q8N823 705 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 DEFB124Q8NES8 71 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 TMEM171Q8WVE6 324 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 TMEM222Q9H0R3 208 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 CRIM1Q9NZV1 1036 aa10.73□□□□□ -0.69
RNF4-222ENST00000541204 UBE2J1Q9Y385 318 aaPredicted RBP10.73□□□□□ -0.69
RNF4-222ENST00000541204 NXPH3O95157 252 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 RPS23P62266 143 aaKnown RBP10.72□□□□□ -0.69
RNF4-222ENST00000541204 ARG2P78540 354 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 PMP22Q01453 160 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 CXorf66Q5JRM2 361 aaPredicted RBP10.72□□□□□ -0.69
RNF4-222ENST00000541204 TMEM211Q6ICI0 200 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 ZNF695Q8IW36 515 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 ZNF100Q8IYN0 542 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 LFNGQ8NES3 379 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 APH1AQ96BI3 265 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 PAPOLGQ9BWT3 736 aaKnown RBP10.72□□□□□ -0.69
RNF4-222ENST00000541204 C11orf1Q9H5F2 150 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 IL36GQ9NZH8 169 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 OR2C1O95371 312 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 ZNF266Q14584 549 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 KRTAP27-1Q3LI81 207 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 RNFT1Q5M7Z0 435 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 DPPA2Q7Z7J5 298 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 FER1L6-AS2Q96M78 137 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 OTOGLQ3ZCN5 2332 aa10.72□□□□□ -0.69
RNF4-222ENST00000541204 RBFOX3A6NFN3 312 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 C3orf80F5H4A9 247 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 CLN5O75503 358 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 CDS2O95674 445 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 NGFP01138 241 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 NCMAPQ5T1S8 102 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 OR56B2PQ8NGI1 322 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 OR5C1Q8NGR4 320 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 PARPBPQ9NWS1 579 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 PRSS50Q9UI38 385 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 ZNF816-ZNF321PA0A0X1KG74 233 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 PROB1E7EW31 1015 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 KLRC4-KLRK1H3BQV0 150 aa10.71□□□□□ -0.69
RNF4-222ENST00000541204 ADAM20O43506 726 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms