RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 ADIRFQ15847 76 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 AAED1Q7RTV5 226 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 FADS6Q8N9I5 356 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 RBM7Q9Y580 266 aaKnown RBP9.69□□□□□ -0.86
SYNE1-237ENST00000539504 IGKV1D-13A0A0B4J2D9 117 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 ZNF705GA8MUZ8 300 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-237ENST00000539504 SYNGR3O43761 229 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 IGKV1-13P0DP09 117 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 CRYGSP22914 178 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 IL24Q13007 206 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 YRDCQ86U90 279 aaKnown RBP9.69□□□□□ -0.86
SYNE1-237ENST00000539504 ZNF816-ZNF321PA0A0X1KG74 233 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-237ENST00000539504 LOC102723971A0A1B0GUV8 181 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-237ENST00000539504 ELLP55199 621 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-237ENST00000539504 HIST1H3AP68431 136 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 WDR74Q6RFH5 385 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-237ENST00000539504 TMEM56Q96MV1 263 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 PLK3Q9H4B4 646 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 RPRMQ9NS64 109 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 TMEM56-RWDD3S4R434 201 aa9.69□□□□□ -0.86
SYNE1-237ENST00000539504 SSTP61278 116 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 PKIAP61925 76 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 PSG4Q00888 419 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 OR8B8Q15620 311 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 CEACAM16Q2WEN9 425 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 C9orf135Q5VTT2 229 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 Q6ZPA2 131 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 LILRB2Q8N423 598 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 ZIC4Q8N9L1 334 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 OR13D1Q8NGV5 346 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 M1APQ8TC57 530 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 RNF138Q8WVD3 245 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 IL1F10Q8WWZ1 152 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 SRXN1Q9BYN0 137 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 CNOT4O95628 575 aaKnown RBP9.68□□□□□ -0.86
SYNE1-237ENST00000539504 METTL15P1P0C7V9 234 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 BCL3P20749 454 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 LTBRP36941 435 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 SSX3Q99909 188 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 URB1O60287 2271 aaKnown RBP9.68□□□□□ -0.86
SYNE1-237ENST00000539504 SLC22A20A6NK97 555 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 B4DEV8 164 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 RPL36A-HNRNPH2H7BZ11 118 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 IFNA10P01566 189 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 BCL2P10415 239 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 ID3Q02535 119 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 ZNF468Q5VIY5 522 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-237ENST00000539504 UNQ6494/PRO21346Q6UXR6 183 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 SMOC1Q9H4F8 434 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 TMEM38BQ9NVV0 291 aa9.68□□□□□ -0.86
SYNE1-237ENST00000539504 DSCR4P56555 118 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-237ENST00000539504 WDR25Q64LD2 544 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-237ENST00000539504 REC114Q7Z4M0 266 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 PRR18Q8N4B5 295 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 FOXB1Q99853 325 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 BCAT2O15382 392 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-237ENST00000539504 TRAPPC6AO75865 159 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 CYB5R3P00387 301 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-237ENST00000539504 CARD18P57730 90 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 SSX2Q16385 188 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 SIGLEC12Q96PQ1 595 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 C11orf1Q9H5F2 150 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 VSIRQ9H7M9 311 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 FAM186AA6NE01 2351 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 HMGB3O15347 200 aaKnown RBP9.67□□□□□ -0.86
SYNE1-237ENST00000539504 CXCL13O43927 109 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 CST2P09228 141 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 LIFP15018 202 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 IL2RGP31785 369 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 GPM6AP51674 278 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 PNRC1Q12796 327 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-237ENST00000539504 CLN3Q13286 438 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 EXT1Q16394 746 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 GUSBP11Q6P575 273 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 FGFBP3Q8TAT2 258 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 RDH5Q92781 318 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 SMIM7Q9BQ49 75 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 IL36RNQ9UBH0 155 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 LAMP3Q9UQV4 416 aa9.67□□□□□ -0.86
SYNE1-237ENST00000539504 PTRH2Q9Y3E5 179 aaKnown RBP9.67□□□□□ -0.86
SYNE1-237ENST00000539504 EYSQ5T1H1 3165 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 hCG_38984A0A1B0GV85 526 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 CD300LBA8K4G0 201 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 HS3ST1O14792 307 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 ZIC3O60481 467 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 IDH3GP51553 393 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-237ENST00000539504 TESK1Q15569 626 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 NMSQ5H8A3 153 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 FAM90A2PQ658T7 463 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 ZNF385CQ66K41 422 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-237ENST00000539504 ASCL4Q6XD76 172 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 FOXL2NBQ6ZUU3 175 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 H1FOOQ8IZA3 346 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-237ENST00000539504 OR5T1Q8NG75 326 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 OR56B2PQ8NGI1 322 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 RPUSD4Q96CM3 377 aaKnown RBP9.66□□□□□ -0.86
SYNE1-237ENST00000539504 HIST1H2BLQ99880 126 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 PLSCR2Q9NRY7 297 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms