RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PELI1Q96FA3 418 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 BARHL1Q9BZE3 327 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 DCLRE1BQ9H816 532 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 LINC01548A6NM66 108 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 HSPB6O14558 160 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 SULT1B1O43704 296 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 IGHV3-7P01780 117 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 TMEM225BP0DP42 221 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 CDX1P47902 265 aaPredicted RBP10.66□□□□□ -0.7
SS18-204ENST00000539244 ALKBH1Q13686 389 aaKnown RBP10.66□□□□□ -0.7
SS18-204ENST00000539244 HNF4GQ14541 408 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 KIR2DS1Q14954 304 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 PNLIPRP3Q17RR3 467 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 PAN3Q58A45 887 aaKnown RBP10.66□□□□□ -0.7
SS18-204ENST00000539244 ZNF691Q5VV52 312 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 AMIGO2Q86SJ2 522 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 SERPINA12Q8IW75 414 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 OR5D14Q8NGL3 314 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 OR8U1Q8NH10 309 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 LEAP2Q969E1 77 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 DUX3Q96PT4 197 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 GON7Q9BXV9 100 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 ABCG5Q9H222 651 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 RIBC2Q9H4K1 309 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 LIN7CQ9NUP9 197 aaKnown RBP10.66□□□□□ -0.7
SS18-204ENST00000539244 AP4S1Q9Y587 144 aa10.66□□□□□ -0.7
SS18-204ENST00000539244 STAB2Q8WWQ8 2551 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 IGHV1-3A0A0C4DH29 117 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 DAPL1A0PJW8 107 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 C3orf84H3BNL1 204 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 HSD17B6O14756 317 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 RPLP1P05386 114 aaKnown RBP10.65□□□□□ -0.7
SS18-204ENST00000539244 HCKP08631 526 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 RPSAP08865 295 aaKnown RBP10.65□□□□□ -0.7
SS18-204ENST00000539244 FCGR1AP12314 374 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 SSTR5P35346 364 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 GPR12P47775 334 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 GNG10P50151 68 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 LUMP51884 338 aaPredicted RBP10.65□□□□□ -0.7
SS18-204ENST00000539244 FOXE3Q13461 319 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 C9orf66Q5T8R8 295 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 ACBD7Q8N6N7 88 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 Q8N9W7 124 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 OR5M8Q8NGP6 311 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 OR10X1Q8NGY0 326 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 RFESDQ8TAC1 157 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 PLPPR1Q8TBJ4 325 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 MRGPRDQ8TDS7 321 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 RNFT2Q96EX2 444 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 EAF1Q96JC9 268 aaPredicted RBP10.65□□□□□ -0.7
SS18-204ENST00000539244 C4orf36Q96KX1 117 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 OAZ3Q9UMX2 235 aa10.65□□□□□ -0.7
SS18-204ENST00000539244 EXOGQ9Y2C4 368 aaKnown RBP10.65□□□□□ -0.7
SS18-204ENST00000539244 DNAH7Q8WXX0 4024 aa10.65□□□□□ -0.71
SS18-204ENST00000539244 DYNC2H1Q8NCM8 4307 aaKnown RBP10.64□□□□□ -0.71
SS18-204ENST00000539244 MPZL2O60487 215 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 GAPDHP04406 335 aaKnown RBP10.64□□□□□ -0.71
SS18-204ENST00000539244 ELANEP08246 267 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 CFHR3Q02985 330 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 GPR50Q13585 617 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 FHL3Q13643 280 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 CXorf66Q5JRM2 361 aaPredicted RBP10.64□□□□□ -0.71
SS18-204ENST00000539244 MEDAGQ5VYS4 303 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 ZNF529Q6P280 563 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 LINC00311Q8N616 119 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 C8orf31Q8N9H6 132 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 TMEM104Q8NE00 496 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 OR52M1Q8NGK5 317 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 CPNE2Q96FN4 548 aaPredicted RBP10.64□□□□□ -0.71
SS18-204ENST00000539244 NR1H4Q96RI1 486 aaPredicted RBP10.64□□□□□ -0.71
SS18-204ENST00000539244 PRR25Q96S07 402 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 IFT22Q9H7X7 185 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 PLSCR3Q9NRY6 295 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 SCOCQ9UIL1 159 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 ZNF580Q9UK33 172 aa10.64□□□□□ -0.71
SS18-204ENST00000539244 SIRT4Q9Y6E7 314 aaPredicted RBP10.64□□□□□ -0.71
SS18-204ENST00000539244 TMEM212A6NML5 194 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 J3QLW9 94 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 CCRL2O00421 344 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 ZNF19P17023 458 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 GZMHP20718 246 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 RAB25P57735 213 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 SNRPGP62308 76 aaKnown RBP10.63□□□□□ -0.71
SS18-204ENST00000539244 GALEQ14376 348 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 ZSCAN26Q16670 478 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 LTC4SQ16873 150 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 DEFB136Q30KP8 78 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 ASCL4Q6XD76 172 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 MOB3BQ86TA1 216 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 SYS1Q8N2H4 156 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 OR2T10Q8NGZ9 312 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 ST6GALNAC6Q969X2 333 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 MRPL48Q96GC5 212 aaKnown RBP10.63□□□□□ -0.71
SS18-204ENST00000539244 CENPNQ96H22 339 aaPredicted RBP10.63□□□□□ -0.71
SS18-204ENST00000539244 MYCBPQ99417 103 aaPredicted RBP10.63□□□□□ -0.71
SS18-204ENST00000539244 IMPAD1Q9NX62 359 aa10.63□□□□□ -0.71
SS18-204ENST00000539244 A0A1W2PPE3 182 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 NCBP2LA6PVI3 153 aaKnown RBP10.62□□□□□ -0.71
SS18-204ENST00000539244 GABRPO00591 440 aa10.62□□□□□ -0.71
SS18-204ENST00000539244 RRP9O43818 475 aaKnown RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms