RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SF3B6Q9Y3B4 125 aaKnown RBP12.29□□□□□ -0.44
CPSF1-208ENST00000532560 TRAV24A0A0B4J272 114 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 IL1AP01583 271 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 RNASE1P07998 156 aaKnown RBP12.28□□□□□ -0.44
CPSF1-208ENST00000532560 GTF2F2P13984 249 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 SRMP19623 302 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 SAA4P35542 130 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 SLC9A3R2Q15599 337 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 SSX1Q16384 188 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 MPV17LQ2QL34 196 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 PAN3Q58A45 887 aaKnown RBP12.28□□□□□ -0.44
CPSF1-208ENST00000532560 GLIPR1L1Q6UWM5 242 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 Q6YL49 198 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 CCDC190Q86UF4 302 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 LDLRAD3Q86YD5 345 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 LYSMD2Q8IV50 215 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 FOXRED1Q96CU9 486 aaPredicted RBP12.28□□□□□ -0.44
CPSF1-208ENST00000532560 MRPS24Q96EL2 167 aaKnown RBP12.28□□□□□ -0.44
CPSF1-208ENST00000532560 COQ2Q96H96 371 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 NEURL2Q9BR09 285 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 HEXA-AS1Q9H8Q6 139 aa12.28□□□□□ -0.44
CPSF1-208ENST00000532560 TRGV10A0A0A0MS01 117 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 ODAMA1E959 279 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 MEX3AA1L020 520 aaKnown RBP12.27□□□□□ -0.45
CPSF1-208ENST00000532560 ARL6IP5O75915 188 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 APOA1P02647 267 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 FBP1P09467 338 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 IGHV1-8P0DP01 117 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 GALP22466 123 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 GLIPR1P48060 266 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 KCNJ3P48549 501 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 AESQ08117 197 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 ATXN7L3Q14CW9 347 aaPredicted RBP12.27□□□□□ -0.45
CPSF1-208ENST00000532560 MIDNQ504T8 468 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 KRBOX4Q5JUW0 171 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 GLT8D1Q68CQ7 371 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 ZNF782Q6ZMW2 699 aaPredicted RBP12.27□□□□□ -0.45
CPSF1-208ENST00000532560 PNKDQ8N490 385 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 TMEM86BQ8N661 226 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 CORO2AQ92828 525 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 SLC25A28Q96A46 364 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 SLITRK2Q9H156 845 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 NCOR1P1Q9H4R4 102 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 GHRLQ9UBU3 117 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 FAM96BQ9Y3D0 163 aa12.27□□□□□ -0.45
CPSF1-208ENST00000532560 A0A1W2PP11 408 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 MEIOCA2RUB1 952 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 HSPB6O14558 160 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 GEMIN2O14893 280 aaKnown RBP12.26□□□□□ -0.45
CPSF1-208ENST00000532560 HOXA3O43365 443 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-208ENST00000532560 OR7C1O76099 320 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-208ENST00000532560 MELTFP08582 738 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 CD37P11049 281 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 PSMD7P51665 324 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 FABP5Q01469 135 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 IFITM3Q01628 133 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 C1orf100Q5SVJ3 147 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 TRAPPC6BQ86SZ2 158 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 ZBTB8BQ8NAP8 495 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-208ENST00000532560 OR13D1Q8NGV5 346 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 CHAC2Q8WUX2 184 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 SSMEM1Q8WWF3 244 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 AP3S1Q92572 193 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 DUX5Q96PT3 197 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 DPCDQ9BVM2 203 aaPredicted RBP12.26□□□□□ -0.45
CPSF1-208ENST00000532560 GAL3ST2Q9H3Q3 398 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 TAS2R3Q9NYW6 316 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 OR6C3Q9NZP0 311 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 ZNF581Q9P0T4 197 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 ZNRD1Q9P1U0 126 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 POMT1Q9Y6A1 747 aa12.26□□□□□ -0.45
CPSF1-208ENST00000532560 A0A1W2PRD5 423 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 A0A1W2PRF3 423 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 A0A1W2PRM7 423 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A10PA6NDY2 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A18PA6NE21 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A16PA6NEW6 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A20PA6NIJ5 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A8PA6NJQ4 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A7PA6NKC0 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A22PA8MWA6 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A12PA8MX19 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A5PA8MXJ8 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A23PA8MXZ1 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A15PP0C7V4 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A13PP0C7W8 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A14PP0C7W9 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 FAM90A24PP0C7X0 464 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 UBBP0CG47 229 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 MGMTP16455 207 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 COX7A1P24310 79 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 ACTG1P63261 375 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 RSBN1Q5VWQ0 802 aaPredicted RBP12.25□□□□□ -0.45
CPSF1-208ENST00000532560 CD200R1LQ6Q8B3 271 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 SUMF2Q8NBJ7 301 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 TMEM104Q8NE00 496 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 BARHL1Q9BZE3 327 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 CST11Q9H112 138 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 SPACA1Q9HBV2 294 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 RCC2Q9P258 522 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms