RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	CD5L	O43866	347 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	ZIC3	O60481	467 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	SEMA4F	O95754	770 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	JCHAIN	P01591	159 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	HLA-DQB2	P05538	268 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	ANKRD34C	P0C6C1	535 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	PGA3	P0DJD8	388 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	GNB3	P16520	340 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	SOX3	P41225	446 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	CDKN2B	P42772	138 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	CLDN15	P56746	228 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	TAS2R20	P59543	309 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	BTG2	P78543	158 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	HIST1H1A	Q02539	215 aa	Predicted RBP	4.76	□□□□□ -1.65
CD44-231	ENST00000531110	ACVR1	Q04771	509 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	ZP4	Q12836	540 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	ZNF234	Q14588	700 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	PDGFRL	Q15198	375 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	ZIC1	Q15915	447 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	HIST3H3	Q16695	136 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	ODF4	Q2M2E3	257 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	SPANXN3	Q5MJ09	141 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	C9orf57	Q5W0N0	161 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	RUSC1-AS1	Q66K80	236 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	ZFAND6	Q6FIF0	208 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	UFSP1	Q6NVU6	142 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	4.76	□□□□□ -1.65
CD44-231	ENST00000531110	RICTOR	Q6R327	1708 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	OPN5	Q6U736	354 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	C18orf65	Q6ZTR6	163 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	C16orf82	Q7Z2V1	217 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	CPEB2	Q7Z5Q1	589 aa	Known RBP	4.76	□□□□□ -1.65
CD44-231	ENST00000531110	CMTM1	Q8IZ96	169 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	TCEANC	Q8N8B7	351 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	ZNF439	Q8NDP4	499 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	ACVR1C	Q8NER5	493 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	OR6N1	Q8NGY5	312 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	TMED6	Q8WW62	240 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	FRZB	Q92765	325 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	NAT6	Q93015	286 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	PTX4	Q96A99	478 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	SNRNP40	Q96DI7	357 aa	Known RBP	4.76	□□□□□ -1.65
CD44-231	ENST00000531110	MS4A10	Q96PG2	267 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	GABRG3	Q99928	467 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	DOHH	Q9BU89	302 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	C20orf24	Q9BUV8	137 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	VAMP8	Q9BV40	100 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	NUDT9	Q9BW91	350 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	TMEM133	Q9H2Q1	129 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	TUBB1	Q9H4B7	451 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	RNF167	Q9H6Y7	350 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	WDR76	Q9H967	626 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	PXMP2	Q9NR77	195 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	HSPB8	Q9UJY1	196 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	VPREB3	Q9UKI3	123 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	BOK	Q9UMX3	212 aa	Predicted RBP	4.76	□□□□□ -1.65
CD44-231	ENST00000531110	GPR132	Q9UNW8	380 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	FUT9	Q9Y231	359 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	HS3ST2	Q9Y278	367 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	CSDC2	Q9Y534	153 aa	Known RBP	4.76	□□□□□ -1.65
CD44-231	ENST00000531110	STRCP1	A6NGW2	1772 aa		4.76	□□□□□ -1.65
CD44-231	ENST00000531110	LOC100509620	A0A075B734	347 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	CENPVL3	A0A0U1RRI6	287 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110		A0A1B0GU03	582 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110		A0A1B0GX51	115 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110		A0A1W2PPV9	198 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110		A0A1W2PQF6	199 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	IGLC7	A0M8Q6	106 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110		M0QXV9	152 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	SIRPB1	O00241	398 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	PHF1	O43189	567 aa	Predicted RBP	4.75	□□□□□ -1.65
CD44-231	ENST00000531110	GNG7	O60262	68 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	PAGE4	O60829	102 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	NDUFS7	O75251	213 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	GRAP2	O75791	330 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	UTS2	O95399	124 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	ETHE1	O95571	254 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	HLA-A	P01891	365 aa	Known RBP	4.75	□□□□□ -1.65
CD44-231	ENST00000531110	ORM1	P02763	201 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	TRGC2	P03986	189 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	CTSD	P07339	412 aa	Predicted RBP	4.75	□□□□□ -1.65
CD44-231	ENST00000531110	IL3	P08700	152 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	OR4A8	P0C604	315 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	CD99	P14209	185 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	ELK1	P19419	428 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	EVI2A	P22794	236 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	CA7	P43166	264 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	OR3A4P	P47883	348 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	TCL1A	P56279	114 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	SEC61B	P60468	96 aa	Known RBP	4.75	□□□□□ -1.65
CD44-231	ENST00000531110	PLCXD2	Q0VAA5	305 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	TAF13	Q15543	124 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	TIMM23B	Q5SRD1	257 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	PODNL1	Q6PEZ8	512 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	C12orf54	Q6X4T0	127 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	TMEM182	Q6ZP80	229 aa	Predicted RBP	4.75	□□□□□ -1.65
CD44-231	ENST00000531110		Q6ZS92	163 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110		Q6ZSR6	202 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	LRP11	Q86VZ4	500 aa		4.75	□□□□□ -1.65
CD44-231	ENST00000531110	BLID	Q8IZY5	108 aa		4.75	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms