RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CCR2P41597 374 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 GCLMP48507 274 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 PFN3P60673 137 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 BTN3A2P78410 334 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 INCA1Q0VD86 236 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 TWF1Q12792 350 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 GINS1Q14691 196 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 TSNQ15631 228 aaKnown RBP3.66□□□□□ -1.82
CD44-220ENST00000525688 KIF26BQ2KJY2 2108 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 C17orf58Q2M2W7 97 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 PARP15Q460N3 678 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 LIN52Q52LA3 116 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 C14orf177Q52M58 125 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 HIST2H3PS2Q5TEC6 136 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 CYB5R2Q6BCY4 276 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 ZNF343Q6P1L6 599 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 ZNF440Q8IYI8 595 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 GAPTQ8N292 157 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 SLC26A10Q8NG04 563 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 OR13D1Q8NGV5 346 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 OR51Q1Q8NH59 317 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 RFESDQ8TAC1 157 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 ASB17Q8WXJ9 295 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 ASB13Q8WXK3 278 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 FGF13Q92913 245 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 YIPF5Q969M3 257 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 CPNE2Q96FN4 548 aaPredicted RBP3.66□□□□□ -1.82
CD44-220ENST00000525688 ACTR6Q9GZN1 396 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 MIXL1Q9H2W2 232 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 TXNIPQ9H3M7 391 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 METTL17Q9H7H0 456 aaPredicted RBP3.66□□□□□ -1.82
CD44-220ENST00000525688 HEXA-AS1Q9H8Q6 139 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 EXOSC4Q9NPD3 245 aaKnown RBP3.66□□□□□ -1.82
CD44-220ENST00000525688 EXOSC3Q9NQT5 275 aaKnown RBP3.66□□□□□ -1.82
CD44-220ENST00000525688 COMMD9Q9P000 198 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 SLC2A6Q9UGQ3 507 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 PRO0628Q9UI54 55 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 ZNF225Q9UK10 706 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 MOKQ9UQ07 419 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 TRAPPC4Q9Y296 219 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 ZNF256Q9Y2P7 627 aaPredicted RBP3.66□□□□□ -1.82
CD44-220ENST00000525688 TECTAO75443 2155 aa3.66□□□□□ -1.82
CD44-220ENST00000525688 USP34Q70CQ2 3546 aa3.65□□□□□ -1.82
CD44-220ENST00000525688 MYO15AQ9UKN7 3530 aa3.65□□□□□ -1.82
CD44-220ENST00000525688 ZDBF2Q9HCK1 2354 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 RFPL4AA6NLU0 287 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 KRTAP16-1A8MUX0 517 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 ZNF705EA8MWA4 302 aaPredicted RBP3.65□□□□□ -1.83
CD44-220ENST00000525688 LINC00587B1AMM8 73 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 PPP5D1E7EU14 171 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 F6UB75 175 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 RFPL4AL1F8VTS6 287 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 KPNA4O00629 521 aaPredicted RBP3.65□□□□□ -1.83
CD44-220ENST00000525688 TCAPO15273 167 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 RP2O75695 350 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 CCNKO75909 580 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 S1PR2O95136 353 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 SOX14O95416 240 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 TTC4O95801 387 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 LALBAP00709 142 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 PGA4P0DJD7 388 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 PGA3P0DJD8 388 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 HMGA1P17096 107 aaKnown RBP3.65□□□□□ -1.83
CD44-220ENST00000525688 MYL12AP19105 171 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 MFAP2P55001 183 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 BIDP55957 195 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 VSX2P58304 361 aaPredicted RBP3.65□□□□□ -1.83
CD44-220ENST00000525688 ESRRGP62508 458 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 ZNF92Q03936 586 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 PPP1R1AQ13522 171 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 HTR4Q13639 388 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 KCNJ11Q14654 390 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 CLEC12BQ2HXU8 276 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 NSUN5P1Q3KNT7 163 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 ARHGAP11BQ3KRB8 267 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 TFDP3Q5H9I0 405 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 ZNF506Q5JVG8 444 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 FAM219BQ5XKK7 198 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 Q6ZVH6 145 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 FAM231DQ6ZW35 169 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 FAM220AQ7Z4H9 259 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 GLT6D1Q7Z4J2 308 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 UBALD2Q8IYN6 164 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 UBL4BQ8N7F7 174 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 OR10R2Q8NGX6 335 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 ZFAND1Q8TCF1 268 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 C11orf40Q8WZ69 217 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 FGF14Q92915 247 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 UCN3Q969E3 161 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 TMBIM1Q969X1 311 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 CLDN23Q96B33 292 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 SLC25A38Q96DW6 304 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 OLFM3Q96PB7 478 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 QKIQ96PU8 341 aaKnown RBP eCLIP3.65□□□□□ -1.83
CD44-220ENST00000525688 MED18Q9BUE0 208 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 OR51I1Q9H343 314 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 CLMPQ9H6B4 373 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 TMEM9BQ9NQ34 198 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 BIN3Q9NQY0 253 aa3.65□□□□□ -1.83
CD44-220ENST00000525688 DDIT4Q9NX09 232 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms