RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 P2RY1P47900 373 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 HLA-DRB3P79483 266 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 C9orf152Q5JTZ5 239 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 KDF1Q8NAX2 398 aaPredicted RBP11.07□□□□□ -0.64
USP53-209ENST00000514665 POM121L2Q96KW2 1035 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 GPHA2Q96T91 129 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 DUSP15Q9H1R2 295 aaPredicted RBP11.07□□□□□ -0.64
USP53-209ENST00000514665 RCC2Q9P258 522 aaKnown RBP11.07□□□□□ -0.64
USP53-209ENST00000514665 DOCK7Q96N67 2140 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 A0A0B4J293 547 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 C1orf100Q5SVJ3 147 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 FAM27BQ5VT28 67 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 TMEM65Q6PI78 240 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 CPEB3Q8NE35 698 aaKnown RBP11.07□□□□□ -0.64
USP53-209ENST00000514665 LHFPL5Q8TAF8 219 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 ZNF251Q9BRH9 671 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 IFT22Q9H7X7 185 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 SLC35D1Q9NTN3 355 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 LHFPL6Q9Y693 200 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 SHANK1Q9Y566 2161 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 MED13LQ71F56 2210 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 K7EQM0 130 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 RRP8O43159 456 aaKnown RBP11.07□□□□□ -0.64
USP53-209ENST00000514665 KRTDAPP60985 99 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 SIGLECL1Q8N7X8 197 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 FAM181AQ8N9Y4 354 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 OR1K1Q8NGR3 316 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 C10orf35Q96D05 121 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 ZNF586Q9NXT0 402 aa11.07□□□□□ -0.64
USP53-209ENST00000514665 COX7A2P2O60397 106 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 ADAM11O75078 769 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 CT45A10P0DMU9 189 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 RPL11P62913 178 aaKnown RBP11.06□□□□□ -0.64
USP53-209ENST00000514665 PSG4Q00888 419 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 NR2C2APQ86WQ0 139 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 GINS3Q9BRX5 216 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 SEC11CQ9BY50 192 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 PRO1933Q9H354 126 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 TREM2Q9NZC2 230 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 RGPD3A6NKT7 1758 aaPredicted RBP11.06□□□□□ -0.64
USP53-209ENST00000514665 BDP1A6H8Y1 2624 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 A0A1W2PNV4 684 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 ATP6V0CP27449 155 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 RUNX1Q01196 453 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 ZNF345Q14585 488 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 TMEM211Q6ICI0 200 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 MSL2Q9HCI7 577 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 GPR132Q9UNW8 380 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 CACNA1BQ00975 2339 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 CDS2O95674 445 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 CLEC3BP05452 202 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 CDC34P49427 236 aaPredicted RBP11.06□□□□□ -0.64
USP53-209ENST00000514665 FAM3AP98173 230 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 RSPO4Q2I0M5 234 aaPredicted RBP11.06□□□□□ -0.64
USP53-209ENST00000514665 IGSF11Q5DX21 431 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 VAX1Q5SQQ9 334 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 SCARF2Q96GP6 870 aaPredicted RBP11.06□□□□□ -0.64
USP53-209ENST00000514665 HES4Q9HCC6 221 aa11.06□□□□□ -0.64
USP53-209ENST00000514665 NPDC1Q9NQX5 325 aaPredicted RBP11.06□□□□□ -0.64
USP53-209ENST00000514665 FAM74A7A6NL05 159 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 TGFBR3LH3BV60 316 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 CHEK1O14757 476 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 RECKO95980 971 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 FCGR3AP08637 254 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 CTRB1P17538 263 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 FAM74A3Q4VXF1 159 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 CTRB2Q6GPI1 263 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 SMIM15Q7Z3B0 74 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 CCL17Q92583 94 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 TIMD4Q96H15 378 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 ANK1P16157 1881 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 A0A0G2JK05 382 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 HRASP01112 189 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 FABP1P07148 127 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 ADH4P08319 380 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 PGA4P0DJD7 388 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 VWCEQ96DN2 955 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 PDCD11Q14690 1871 aaKnown RBP11.05□□□□□ -0.64
USP53-209ENST00000514665 TMEM229AB2RXF0 380 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 AGFG2O95081 481 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 SPP1P10451 314 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 PMELP40967 661 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 GALR1P47211 349 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 MEOX2P50222 304 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 SULT1A1P50225 295 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 PUSL1Q8N0Z8 303 aaKnown RBP11.05□□□□□ -0.64
USP53-209ENST00000514665 NPAS1Q99742 590 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 GNB4Q9HAV0 340 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 J3QT63 122 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 MUC1P15941 1255 aaPredicted RBP11.05□□□□□ -0.64
USP53-209ENST00000514665 TNFRSF1AP19438 455 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 ERVS71-1P61550 626 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 MOB3BQ86TA1 216 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 MS4A3Q96HJ5 214 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 NRIP2Q9BQI9 281 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 SLC26A1Q9H2B4 701 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 TMPRSS5Q9H3S3 457 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 TRAPPC1Q9Y5R8 145 aa11.05□□□□□ -0.64
USP53-209ENST00000514665 HSBP1O75506 76 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 P2RY4P51582 365 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms