RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 OR5AC1P0C628 307 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 SMIM17P0DL12 118 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 C8orf88P0DMB2 117 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 PPIAL4FP0DN26 164 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CD37P11049 281 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 SPNP16150 400 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ABOP16442 354 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 GGT1P19440 569 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 KITLGP21583 273 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 RPS3P23396 243 aaKnown RBP eCLIP1.34□□□□□ -2.19
NUP54-208ENST00000508604 OMGP23515 440 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CMPK1P30085 196 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 BRS3P32247 399 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ADRA1AP35348 466 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 SAA4P35542 130 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CFHR2P36980 270 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CRISP1P54107 249 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ARPP19P56211 112 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 OR10A3P58181 314 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 TAS2R41P59536 307 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 OR2B8PP59922 312 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 RAB8AP61006 207 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 LCN2P80188 198 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 RHOGP84095 191 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CDK6Q00534 326 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 HMGCS1Q01581 520 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 BAXQ07812 192 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 OR5I1Q13606 314 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 HMGN3Q15651 99 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CD226Q15762 336 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ZIC1Q15915 447 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ARHGAP11BQ3KRB8 267 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 TMEM69Q5SWH9 247 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 FAM78BQ5VT40 261 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 SAXO2Q658L1 398 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 HIST2H2AA3Q6FI13 130 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 XAF1Q6GPH4 301 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CASP12Q6UXS9 341 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 TMPRSS11AQ6ZMR5 421 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 TMPPEQ6ZT21 453 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 MBOAT2Q6ZWT7 520 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 AHSA2Q719I0 299 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 OLIG3Q7RTU3 272 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 OR2W3Q7Z3T1 314 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 HIST2H2ABQ8IUE6 130 aaPredicted RBP1.34□□□□□ -2.19
NUP54-208ENST00000508604 CMTM8Q8IZV2 173 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 OR6V1Q8N148 313 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ACOT4Q8N9L9 421 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ZSCAN4Q8NAM6 433 aaPredicted RBP1.34□□□□□ -2.19
NUP54-208ENST00000508604 MDS2Q8NDY4 140 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 B3GNT7Q8NFL0 401 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 OR1P1Q8NH06 330 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 RDH11Q8TC12 318 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 LGALS14Q8TCE9 139 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 SLC7A13Q8TCU3 470 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 TNFAIP8L1Q8WVP5 186 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 FAM151AQ8WW52 585 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 TMEM37Q8WXS4 190 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 FCGR1BQ92637 280 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 NAT6Q93015 286 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 HIST1H2ACQ93077 130 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 UCN3Q969E3 161 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 MCHR2Q969V1 340 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 PINX1Q96BK5 328 aaKnown RBP1.34□□□□□ -2.19
NUP54-208ENST00000508604 TM4SF19Q96DZ7 209 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 MRAP2Q96G30 205 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 REEP6Q96HR9 211 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 TMEM101Q96IK0 257 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 JSRP1Q96MG2 331 aaPredicted RBP1.34□□□□□ -2.19
NUP54-208ENST00000508604 VSTM2LQ96N03 204 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 TGM7Q96PF1 710 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 TP53RKQ96S44 253 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 CPXM1Q96SM3 734 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ARHGDIGQ99819 225 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 C20orf144Q9BQM9 153 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 MARVELD1Q9BSK0 173 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 PBDC1Q9BVG4 233 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 SUCNR1Q9BXA5 334 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 MAP1LC3CQ9BXW4 147 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 SEC11CQ9BY50 192 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 NAA50Q9GZZ1 169 aaKnown RBP1.34□□□□□ -2.19
NUP54-208ENST00000508604 C20orf85Q9H1P6 137 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 MFSD1Q9H3U5 465 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ZNF385DQ9H6B1 395 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ALG9Q9H6U8 611 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 UBE2ZQ9H832 354 aaPredicted RBP1.34□□□□□ -2.19
NUP54-208ENST00000508604 TMEM38BQ9NVV0 291 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 MARCH5Q9NX47 278 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 NXT1Q9UKK6 140 aaKnown RBP1.34□□□□□ -2.19
NUP54-208ENST00000508604 TFR2Q9UP52 801 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 ST3GAL6Q9Y274 331 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 MEMO1Q9Y316 297 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 EXOSC1Q9Y3B2 195 aaKnown RBP1.34□□□□□ -2.19
NUP54-208ENST00000508604 OR10H1Q9Y4A9 318 aa1.34□□□□□ -2.19
NUP54-208ENST00000508604 KNDC1Q76NI1 1749 aa1.34□□□□□ -2.2
NUP54-208ENST00000508604 MARF1Q9Y4F3 1742 aaKnown RBP1.34□□□□□ -2.2
NUP54-208ENST00000508604 CAMTA1Q9Y6Y1 1673 aa1.34□□□□□ -2.2
NUP54-208ENST00000508604 UNC13BO14795 1591 aa1.34□□□□□ -2.2
NUP54-208ENST00000508604 UGGT1Q9NYU2 1555 aa1.34□□□□□ -2.2
NUP54-208ENST00000508604 GPR98Q8WXG9 6306 aa1.34□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms