RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ONECUT1Q9UBC0 465 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 ABCD2Q9UBJ2 740 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 OR14J1Q9UGF5 321 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 POMPQ9Y244 141 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 KCNK7Q9Y2U2 307 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 IER3IP1Q9Y5U9 82 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 VPS13DQ5THJ4 4388 aa3.07□□□□□ -1.92
USP54-217ENST00000498213 hCG_38984A0A1B0GV85 526 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 A0A1W2PQ09 198 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 hADV38S2A0JD32 116 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 OR2AT4A6NND4 320 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 C17orf98A8MV24 154 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 SMIM1B2RUZ4 78 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 H0YHG0 523 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 H3BUX3 64 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 CIDEAO60543 219 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 RHBDL1O75783 438 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 GYPAP02724 150 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 HLA-DPB1P04440 258 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 NCK1P16333 377 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 ZNF3P17036 446 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 MPZP25189 248 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 HSD11B1P28845 292 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 ERP29P30040 261 aaKnown RBP3.06□□□□□ -1.92
USP54-217ENST00000498213 RRM2P31350 389 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 MYCNOSP40205 109 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 KIR3DL2P43630 455 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 OR1E2P47887 323 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 GSSP48637 474 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 RPL31P62899 125 aaKnown RBP3.06□□□□□ -1.92
USP54-217ENST00000498213 RPL24P83731 157 aaKnown RBP3.06□□□□□ -1.92
USP54-217ENST00000498213 FAM3AP98173 230 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 ZNF92Q03936 586 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 LIPEQ05469 1076 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 RIPK1Q13546 671 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 RCN1Q15293 331 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 MPPED2Q15777 294 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 CEACAM21Q3KPI0 293 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 C14orf177Q52M58 125 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 LRRC23Q53EV4 343 aaPredicted RBP3.06□□□□□ -1.92
USP54-217ENST00000498213 SPRNQ5BIV9 151 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 SLC35D3Q5M8T2 416 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 SAMD4BQ5PRF9 694 aaKnown RBP3.06□□□□□ -1.92
USP54-217ENST00000498213 C1orf146Q5VVC0 180 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 PLBD1Q6P4A8 553 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 RASSF6Q6ZTQ3 369 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 SLC16A9Q7RTY1 509 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 C11orf53Q8IXP5 236 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 OR5AS1Q8N127 324 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 Q8N7P7 452 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 BHLHE23Q8NDY6 225 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 PROKR2Q8NFJ6 384 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 OR2T33Q8NG76 320 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 OR56B2PQ8NGI1 322 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 GNPDA2Q8TDQ7 276 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 LRRC29Q8WV35 223 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 PYDC1Q8WXC3 89 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 ASB17Q8WXJ9 295 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 OR5P3Q8WZ94 311 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 DUS3LQ96G46 650 aaKnown RBP3.06□□□□□ -1.92
USP54-217ENST00000498213 ERMAPQ96PL5 475 aaPredicted RBP3.06□□□□□ -1.92
USP54-217ENST00000498213 DDOQ99489 341 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 PAPOLGQ9BWT3 736 aaKnown RBP3.06□□□□□ -1.92
USP54-217ENST00000498213 PRRG3Q9BZD7 231 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 NMNAT2Q9BZQ4 307 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 PKIBQ9C010 78 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 OR52D1Q9H346 318 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 MUC13Q9H3R2 512 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 NEK6Q9HC98 313 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 ENPP5Q9UJA9 477 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 TMEM14AQ9Y6G1 99 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 CDH10Q9Y6N8 788 aa3.06□□□□□ -1.92
USP54-217ENST00000498213 A0A087X0M5 115 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 A0A1B0GX30 115 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 TCRBV3S1A0A5B6 114 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 A6NDX4 124 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 RIIAD1A6NNX1 92 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 ODF3BA8MYP8 253 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.05□□□□□ -1.92
USP54-217ENST00000498213 K7N7A8 449 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 DLGAP1O14490 977 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 CDIPTO14735 213 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 ARPC2O15144 300 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 FGF16O43320 207 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 CIB2O75838 187 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 OR2F2O95006 317 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 GADD45GO95257 159 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 HMGN1P05114 100 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 OR5H8P0DN80 308 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 IGHV1-8P0DP01 117 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 HSD17B1P14061 328 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 HIST1H1CP16403 213 aaKnown RBP3.05□□□□□ -1.92
USP54-217ENST00000498213 GLRA1P23415 457 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 OPRL1P41146 370 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 MNDAP41218 407 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 VDAC2P45880 294 aaPredicted RBP3.05□□□□□ -1.92
USP54-217ENST00000498213 BMXP51813 675 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 F2RL1P55085 397 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 SLC35B1P78383 322 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 BDH1Q02338 343 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms