RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 GALEQ14376 348 aa12.87□□□□□ -0.35
VIM-208ENST00000497849 OR2G6Q5TZ20 316 aa12.87□□□□□ -0.35
VIM-208ENST00000497849 CCDC144NLQ6NUI1 221 aa12.87□□□□□ -0.35
VIM-208ENST00000497849 DEGS2Q6QHC5 323 aa12.87□□□□□ -0.35
VIM-208ENST00000497849 TRAPPC6BQ86SZ2 158 aa12.87□□□□□ -0.35
VIM-208ENST00000497849 DRAM1Q8N682 238 aa12.87□□□□□ -0.35
VIM-208ENST00000497849 RNF166Q96A37 237 aaPredicted RBP12.87□□□□□ -0.35
VIM-208ENST00000497849 CREB3L1Q96BA8 519 aa12.87□□□□□ -0.35
VIM-208ENST00000497849 C4orf36Q96KX1 117 aa12.87□□□□□ -0.35
VIM-208ENST00000497849 IL36RNQ9UBH0 155 aa12.87□□□□□ -0.35
VIM-208ENST00000497849 GTF2A1LQ9UNN4 478 aa12.87□□□□□ -0.35
VIM-208ENST00000497849 DIMT1Q9UNQ2 313 aaKnown RBP12.87□□□□□ -0.35
VIM-208ENST00000497849 A6NIN4 97 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 E9PI62 339 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 CCRL2O00421 344 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 ZNF254O75437 659 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 SRSF10O75494 262 aaKnown RBP12.86□□□□□ -0.35
VIM-208ENST00000497849 MT-ND2P03891 347 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 CDK1P06493 297 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 DCKP27707 260 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 VEGFCP49767 419 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 INSL3P51460 131 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 P2RX3P56373 397 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 PNLIPRP3Q17RR3 467 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 PRSS48Q7RTY5 328 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 FOXRED2Q8IWF2 684 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 SVOPQ8N4V2 548 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 RNF152Q8N8N0 203 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 OR56B4Q8NH76 319 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 CEP19Q96LK0 163 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 VCX3AQ9NNX9 186 aa12.86□□□□□ -0.35
VIM-208ENST00000497849 SIRT4Q9Y6E7 314 aaPredicted RBP12.86□□□□□ -0.35
VIM-208ENST00000497849 H3BSH0 61 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 SULT1C4O75897 302 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 JTBO76095 146 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 INMTO95050 263 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 HAND1O96004 215 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 TTRP02766 147 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 HTR1AP08908 422 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 GABRR1P24046 479 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 ERP29P30040 261 aaKnown RBP12.85□□□□□ -0.35
VIM-208ENST00000497849 ODF4Q2M2E3 257 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 SPARTQ8N0X7 666 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 TRMT10AQ8TBZ6 339 aaKnown RBP12.85□□□□□ -0.35
VIM-208ENST00000497849 SLAMF9Q96A28 289 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 PELI1Q96FA3 418 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 GAL3ST2Q9H3Q3 398 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 SEBOXQ9HB31 216 aaPredicted RBP12.85□□□□□ -0.35
VIM-208ENST00000497849 NUFIP1Q9UHK0 495 aaKnown RBP12.85□□□□□ -0.35
VIM-208ENST00000497849 OR52A1Q9UKL2 312 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 EXOSC1Q9Y3B2 195 aaKnown RBP12.85□□□□□ -0.35
VIM-208ENST00000497849 R4GMQ9 66 aa12.85□□□□□ -0.35
VIM-208ENST00000497849 IGKV1-27A0A075B6S5 117 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 A0A087X0M5 115 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 A0A1B0GX30 115 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 LOC110117498-PIK3R3F6TDL0 507 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 TOR1AO14656 332 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 MGST3O14880 152 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 TMEM11P17152 192 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 MYL12AP19105 171 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 OR3A1P47881 315 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 GTF2A1P52655 376 aaPredicted RBP12.84□□□□□ -0.35
VIM-208ENST00000497849 NANOS3P60323 173 aaKnown RBP12.84□□□□□ -0.35
VIM-208ENST00000497849 GPR50Q13585 617 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 RBM39Q14498 530 aaKnown RBP12.84□□□□□ -0.35
VIM-208ENST00000497849 HNF4GQ14541 408 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 CXorf66Q5JRM2 361 aaPredicted RBP12.84□□□□□ -0.35
VIM-208ENST00000497849 ASPHD1Q5U4P2 390 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 PRSS35Q8N3Z0 413 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 OR11H1Q8NG94 326 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 CORO2AQ92828 525 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 JAM3Q9BX67 310 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 CHCHD3Q9NX63 227 aaKnown RBP12.84□□□□□ -0.35
VIM-208ENST00000497849 V9GYS6 101 aa12.84□□□□□ -0.35
VIM-208ENST00000497849 A0A1W2PPI3 338 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 AP4M1O00189 453 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 LALBAP00709 142 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 DUSP1P28562 367 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 KIR3DL2P43630 455 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 MAP2K4P45985 399 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 RPL5P46777 297 aaKnown RBP12.83□□□□□ -0.36
VIM-208ENST00000497849 PRRX1P54821 245 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 FOXE3Q13461 319 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 DIAPH2-AS1Q14236 149 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 HES1Q14469 280 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 ZNF829Q3KNS6 432 aaPredicted RBP12.83□□□□□ -0.36
VIM-208ENST00000497849 FAM27D1Q5T7N8 215 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 XAF1Q6GPH4 301 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 FAM220AQ7Z4H9 259 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 CATSPERDQ86XM0 798 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 RDH10Q8IZV5 341 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 OR14K1Q8NGZ2 314 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 C4orf3Q8WVX3 66 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 EMG1Q92979 244 aaKnown RBP12.83□□□□□ -0.36
VIM-208ENST00000497849 TAS2R3Q9NYW6 316 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 SLC7A11Q9UPY5 501 aa12.83□□□□□ -0.36
VIM-208ENST00000497849 TRGV10A0A0A0MS01 117 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 A0A1B0GTI1 187 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 FAM230AA0A1W2PPH8 454 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 TFAP2AP05549 437 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms