RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 BCL2L14Q9BZR8 327 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 SLC23A2Q9UGH3 650 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 BTRCQ9Y297 605 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 PHLDA3Q9Y5J5 127 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 URGCP-MRPS24S4R325 110 aa1.31□□□□□ -2.2
VPS50-219ENST00000495039 DOCK6Q96HP0 2047 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 TRGV4A0A0C4DH28 118 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 FAM183AA6NL82 134 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 OVOL1O14753 267 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 LECT2O14960 151 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 CCDC172P0C7W6 258 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 OR12D1P0DN82 309 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 CRABP1P29762 137 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 PYCR1P32322 319 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 GTF2H1P32780 548 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 EVI2BP34910 448 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 CARD18P57730 90 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 TSPAN5P62079 268 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 PSG4Q00888 419 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 PRDX1Q06830 199 aaKnown RBP1.3□□□□□ -2.2
VPS50-219ENST00000495039 TRAM1Q15629 374 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 SPIN4Q56A73 249 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 LAMTOR1Q6IAA8 161 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 CLEC20AQ6ZU45 233 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 SCXQ7RTU7 201 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 RBM45Q8IUH3 476 aaKnown RBP1.3□□□□□ -2.2
VPS50-219ENST00000495039 SLC25A45Q8N413 288 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 ZIC4Q8N9L1 334 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 GATD1Q8NB37 220 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 OR2AE1Q8NHA4 323 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 MFSD8Q8NHS3 518 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 SPPL2BQ8TCT7 592 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 PDCD6IPQ8WUM4 868 aaKnown RBP1.3□□□□□ -2.2
VPS50-219ENST00000495039 CLDN23Q96B33 292 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 RPUSD1Q9UJJ7 312 aaKnown RBP1.3□□□□□ -2.2
VPS50-219ENST00000495039 LINC00588Q9Y4M8 146 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 USH1CQ9Y6N9 552 aa1.3□□□□□ -2.2
VPS50-219ENST00000495039 SHANK3Q9BYB0 1731 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 YLPM1P49750 1951 aaKnown RBP1.29□□□□□ -2.2
VPS50-219ENST00000495039 TRAV8-2A0A0B4J237 113 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 A0A1W2PRG6 482 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 GOLGA8IPA6NC78 632 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 F5H5T6 163 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 SOX14O95416 240 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 IGKV1-16P04430 117 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 IFI30P13284 250 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 SPNP16150 400 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 TSPOP30536 169 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 COILP38432 576 aaPredicted RBP1.29□□□□□ -2.2
VPS50-219ENST00000495039 HSPA13P48723 471 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 XIAPP98170 497 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 APOFQ13790 326 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 DGAT2L6Q6ZPD8 337 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 FAM183BPQ6ZVS7 135 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 KRTCAP2Q8N6L1 136 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 OR5C1Q8NGR4 320 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 LRRC20Q8TCA0 184 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 KCTD4Q8WVF5 259 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 CLEC2DQ9UHP7 191 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 VPREB3Q9UKI3 123 aa1.29□□□□□ -2.2
VPS50-219ENST00000495039 COL11A1P12107 1806 aaPredicted RBP1.29□□□□□ -2.2
VPS50-219ENST00000495039 A0A1B0GW15 77 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 RNASEK-C17orf49H0YIS7 233 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 TMEM250H0YL14 139 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 P0DMU3 169 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 FAM231AP0DMU4 169 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 FAM231CP0DMU5 169 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 TNNC1P63316 161 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 DEFB103AP81534 67 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 C18orf21Q32NC0 220 aaPredicted RBP1.28□□□□□ -2.2
VPS50-219ENST00000495039 ACSBG2Q5FVE4 666 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 Q6ZT83 130 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 SSX7Q7RTT5 188 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 ST13P4Q8IZP2 240 aaPredicted RBP1.28□□□□□ -2.2
VPS50-219ENST00000495039 GPR119Q8TDV5 335 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 IFT81Q8WYA0 676 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 LRRC39Q96DD0 335 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 TAPBPLQ9BX59 468 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 EBPLQ9BY08 206 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 PRRG3Q9BZD7 231 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 RAB1BQ9H0U4 201 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 ALX4Q9H161 411 aaPredicted RBP1.28□□□□□ -2.2
VPS50-219ENST00000495039 METTL8Q9H825 291 aaKnown RBP1.28□□□□□ -2.2
VPS50-219ENST00000495039 TAS2R9Q9NYW1 312 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 RBMX2Q9Y388 322 aaKnown RBP1.28□□□□□ -2.2
VPS50-219ENST00000495039 TBL2Q9Y4P3 447 aaKnown RBP1.28□□□□□ -2.2
VPS50-219ENST00000495039 HSPE1-MOB4S4R3N1 261 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 LCTP09848 1927 aa1.28□□□□□ -2.2
VPS50-219ENST00000495039 MYO9BQ13459 2157 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 CACNA1SQ13698 1873 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 KMT2EQ8IZD2 1858 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 TRPM3Q9HCF6 1732 aaPredicted RBP1.27□□□□□ -2.21
VPS50-219ENST00000495039 MYO15BQ96JP2 1530 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 C17orf98A8MV24 154 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 NDUFS8O00217 210 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 FGF16O43320 207 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 SLC25A20O43772 301 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 SHOX2O60902 331 aaPredicted RBP1.27□□□□□ -2.21
VPS50-219ENST00000495039 INPP1P49441 399 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 KRTAP12-1P59990 96 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms