RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CHRNA7P36544 502 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 UBE2G2P60604 165 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 SUMO1P63165 101 aaKnown RBP14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 ZXDAP98168 799 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 TGIF2LXQ8IUE1 241 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 ANXA10Q9UJ72 324 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 GPR132Q9UNW8 380 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 PI4KAP42356 2102 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 MAP1LC3B2A6NCE7 125 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 NPIPB9F8W1W9 429 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 PRRG2O14669 202 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 CA6P23280 308 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 ATP6V0CP27449 155 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 ZNF92Q03936 586 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 EGR4Q05215 589 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 PHYHD1Q5SRE7 291 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 GPX7Q96SL4 187 aaPredicted RBP14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 PECRQ9BY49 303 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 ACTR3CQ9C0K3 210 aaPredicted RBP14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 MAP1LC3BQ9GZQ8 125 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 SPAARA0A1B0GVQ0 90 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 SH2D1BO14796 132 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 GAMTQ14353 236 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 ALKBH6Q3KRA9 238 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 ADPRHL1Q8NDY3 354 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 AUP1Q9Y679 476 aa14.26□□□□□ -0.13
CCDC88B-209ENST00000494080 A0A1W2PP11 408 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 H0YL77 283 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 M0R1B8 84 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 DVL1O14640 695 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 CTXN2P0C2S0 81 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 LSM6P62312 80 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 RPP30P78346 268 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 ANKRD55Q3KP44 614 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 H1FXQ92522 213 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 HS3ST3B1Q9Y662 390 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 PMS2P1A4D2B8 440 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 NDUFA2O43678 99 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 CD81P60033 236 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 PPP1CBP62140 327 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 LINC01590Q5TEZ4 76 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 ZNRF4Q8WWF5 429 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 PLPPR2Q96GM1 343 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 WDR13Q9H1Z4 485 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 NGBQ9NPG2 151 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 INTS1Q8N201 2190 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 KIF26BQ2KJY2 2108 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 TRAV34A0A0B4J273 112 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 P2RY4P51582 365 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 DYNLT3P51808 116 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 HIST1H3AP68431 136 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 EWSR1Q01844 656 aaKnown RBP eCLIP14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 BSXQ3C1V8 233 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 LY6G6FQ5SQ64 297 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 BTNL8Q6UX41 500 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 COL4A6Q14031 1691 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 UBE2L5PA0A1B0GUS4 154 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 GDF9O60383 454 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 PGA3P0DJD8 388 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 ARL3P36405 182 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 PPP1CCP36873 323 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 TPPP2P59282 170 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 FLVCR1-AS1Q8TAF5 88 aa14.25□□□□□ -0.13
CCDC88B-209ENST00000494080 TTRP02766 147 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 HKR1P10072 659 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 ZNF718Q3SXZ3 478 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 PTX4Q96A99 478 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 HEYLQ9NQ87 328 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 C3orf85A0A1B0GTC6 90 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 F6UZH7 168 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 MKRN2OSH3BPM6 223 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 SLC31A2O15432 143 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 LMX1BO60663 402 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 NDUFB7P17568 137 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 PRDX4Q13162 271 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 RNPS1Q15287 305 aaKnown RBP14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 DCAF10Q5QP82 559 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 LIAT1Q6ZQX7 453 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 PTPRDP23468 1912 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 CLEC18AA5D8T8 446 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 RRP8O43159 456 aaKnown RBP14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 ZNHIT1O43257 154 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 COX5AP20674 150 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 RANP62826 216 aaKnown RBP14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 CLEC18CQ8NCF0 446 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 DTD1Q8TEA8 209 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 FUT9Q9Y231 359 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 GOLT1BQ9Y3E0 138 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 GABRA4P48169 554 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 HABP2Q14520 560 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 OR10P1Q8NGE3 313 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 COA4Q9NYJ1 87 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 FZR1Q9UM11 496 aa14.24□□□□□ -0.13
CCDC88B-209ENST00000494080 GNG3P63215 75 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 WFDC8Q8IUA0 241 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 OR2T10Q8NGZ9 312 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 MSL2Q9HCI7 577 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 FKBP11Q9NYL4 201 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 MDC1Q14676 2089 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 A0A087WV48 116 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms