RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 RBPMSQ93062 196 aaKnown RBP9.13□□□□□ -0.95
USP4-214ENST00000491791 RRNAD1Q96FB5 475 aaKnown RBP9.13□□□□□ -0.95
USP4-214ENST00000491791 ABHD14BQ96IU4 210 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 METTL8Q9H825 291 aaKnown RBP9.13□□□□□ -0.95
USP4-214ENST00000491791 TMEM100Q9NV29 134 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 TMED3Q9Y3Q3 217 aa9.13□□□□□ -0.95
USP4-214ENST00000491791 CLEC18AA5D8T8 446 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 OR5H1A6NKK0 313 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 MPTX1A8MV57 137 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 MPPED1O15442 326 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 PTBP3O95758 552 aaKnown RBP9.12□□□□□ -0.95
USP4-214ENST00000491791 CRYABP02511 175 aaKnown RBP9.12□□□□□ -0.95
USP4-214ENST00000491791 GAPDHP04406 335 aaKnown RBP9.12□□□□□ -0.95
USP4-214ENST00000491791 CELA3BP08861 270 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 PRKACAP17612 351 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 TIMP3P35625 211 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 NUP62P37198 522 aaPredicted RBP9.12□□□□□ -0.95
USP4-214ENST00000491791 IDH3GP51553 393 aaPredicted RBP9.12□□□□□ -0.95
USP4-214ENST00000491791 EIF5AP63241 154 aaKnown RBP9.12□□□□□ -0.95
USP4-214ENST00000491791 PAX5Q02548 391 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 HERPUD1Q15011 391 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 KRTCAP3Q53RY4 240 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 TOR2AQ5JU69 321 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 GGNBP1Q5YKI7 109 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 VWA1Q6PCB0 445 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 BRICD5Q6PL45 260 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 WDR86Q86TI4 376 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 SCCPDHQ8NBX0 429 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 CLEC18CQ8NCF0 446 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 OR8G5Q8NG78 346 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 LILRB1Q8NHL6 650 aaPredicted RBP9.12□□□□□ -0.95
USP4-214ENST00000491791 KLF14Q8TD94 323 aaPredicted RBP9.12□□□□□ -0.95
USP4-214ENST00000491791 DYRK2Q92630 601 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 IL22RA2Q969J5 263 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 ABHD17AQ96GS6 310 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 OR2J1Q9GZK6 312 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 PLEKHA2Q9HB19 425 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 BARX1Q9HBU1 254 aaPredicted RBP9.12□□□□□ -0.95
USP4-214ENST00000491791 MBNL3Q9NUK0 354 aaKnown RBP9.12□□□□□ -0.95
USP4-214ENST00000491791 SDHAF2Q9NX18 166 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 WIPI2Q9Y4P8 454 aa9.12□□□□□ -0.95
USP4-214ENST00000491791 SPTAN1Q13813 2472 aaKnown RBP9.12□□□□□ -0.95
USP4-214ENST00000491791 RP1L1Q8IWN7 2480 aaPredicted RBP9.12□□□□□ -0.95
USP4-214ENST00000491791 USP9YO00507 2555 aaPredicted RBP9.11□□□□□ -0.95
USP4-214ENST00000491791 FAM221AA4D161 298 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 NUDT19A8MXV4 375 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 KRBOX1C9JBD0 128 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 MKRN2OSH3BPM6 223 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.11□□□□□ -0.95
USP4-214ENST00000491791 GPR31O00270 319 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 DEGS1O15121 323 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 DEDDO75618 318 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 LYZL6O75951 148 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 SPDEFO95238 335 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 CDS2O95674 445 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 HOXB5P09067 269 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 TPT1P13693 172 aaKnown RBP9.11□□□□□ -0.95
USP4-214ENST00000491791 M6PRP20645 277 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 IL32P24001 234 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 GNRHRP30968 328 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 KLRB1Q12918 225 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 RAB32Q13637 225 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 SNTB1Q13884 538 aaKnown RBP9.11□□□□□ -0.95
USP4-214ENST00000491791 IGFBP7Q16270 282 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 IAH1Q2TAA2 248 aaPredicted RBP9.11□□□□□ -0.95
USP4-214ENST00000491791 LRRC37A5PQ49AS3 106 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 IGSF11Q5DX21 431 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 GPR157Q5UAW9 335 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 ZNF324BQ6AW86 544 aaPredicted RBP9.11□□□□□ -0.95
USP4-214ENST00000491791 ZNF497Q6ZNH5 498 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 SEM1Q6ZVN7 128 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 CCDC28AQ8IWP9 274 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 BAP18Q8IXM2 172 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 H1FOOQ8IZA3 346 aaPredicted RBP9.11□□□□□ -0.95
USP4-214ENST00000491791 GCNT2Q8N0V5 402 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 OR1J1Q8NGS3 322 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 PRR7Q8TB68 274 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 DCUN1D4Q92564 292 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 DMRTA2Q96SC8 542 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 SLC5A7Q9GZV3 580 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 TOLLIPQ9H0E2 274 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 TMEM222Q9H0R3 208 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 OR5AC2Q9NZP5 309 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 PFDN2Q9UHV9 154 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 PURGQ9UJV8 347 aaKnown RBP9.11□□□□□ -0.95
USP4-214ENST00000491791 PROCRQ9UNN8 238 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 DOCK7Q96N67 2140 aa9.11□□□□□ -0.95
USP4-214ENST00000491791 IGKV1-6A0A0C4DH72 117 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.1□□□□□ -0.95
USP4-214ENST00000491791 F5H0A9 414 aaPredicted RBP9.1□□□□□ -0.95
USP4-214ENST00000491791 OR5AC1P0C628 307 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 HKR1P10072 659 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 SLC25A6P12236 298 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 ZP3P21754 424 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 UCP1P25874 307 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 DUSP1P28562 367 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 HOXC12P31275 282 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 CEACAM8P31997 349 aaPredicted RBP9.1□□□□□ -0.95
USP4-214ENST00000491791 CFHR2P36980 270 aa9.1□□□□□ -0.95
USP4-214ENST00000491791 LUMP51884 338 aaPredicted RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms