RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 UTP11Q9Y3A2 253 aaKnown RBP2.27□□□□□ -2.05
USP48-209ENST00000487880 SLIT1O75093 1534 aa2.27□□□□□ -2.05
USP48-209ENST00000487880 C10orf71Q711Q0 1435 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 FAM208AQ9UK61 1670 aaKnown RBP2.26□□□□□ -2.05
USP48-209ENST00000487880 IGKV1OR2-108A0A075B7D4 117 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 A0A0D9SFI3 127 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 E7EWF7 191 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 H0YJX3 145 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 GOLGA8MH3BSY2 632 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 PGRMC1O00264 195 aaKnown RBP2.26□□□□□ -2.05
USP48-209ENST00000487880 DENRO43583 198 aaKnown RBP2.26□□□□□ -2.05
USP48-209ENST00000487880 TNFAIP8O95379 198 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 PLEKHA8P1O95397 391 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 PSMG1O95456 288 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 SNRPAP09012 282 aaKnown RBP2.26□□□□□ -2.05
USP48-209ENST00000487880 OR5AL1P0C617 328 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 HSPA13P48723 471 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 TUFMP49411 452 aaKnown RBP2.26□□□□□ -2.05
USP48-209ENST00000487880 BCAP31P51572 246 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 DR1Q01658 176 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 FMODQ06828 376 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 PMVKQ15126 192 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 TOMM34Q15785 309 aaPredicted RBP2.26□□□□□ -2.05
USP48-209ENST00000487880 DNAL1Q4LDG9 190 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 CLEC18BQ6UXF7 455 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 ASCL4Q6XD76 172 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 FAM231DQ6ZW35 169 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 SETD3Q86TU7 594 aaPredicted RBP2.26□□□□□ -2.05
USP48-209ENST00000487880 SPERTQ8NA61 448 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 FBXO36Q8NEA4 188 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 OR4K2Q8NGD2 314 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 OR5H2Q8NGV7 314 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 RASSF5Q8WWW0 418 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 NELFBQ8WX92 580 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 BORCS5Q969J3 196 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 TMED9Q9BVK6 235 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 PLA2G12AQ9BZM1 189 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 CHRNA10Q9GZZ6 450 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 C6orf50Q9HD87 102 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 DIABLOQ9NR28 239 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 ARMC1Q9NVT9 282 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 RABL2AQ9UBK7 228 aaPredicted RBP2.26□□□□□ -2.05
USP48-209ENST00000487880 RSL24D1Q9UHA3 163 aaKnown RBP2.26□□□□□ -2.05
USP48-209ENST00000487880 PRO0628Q9UI54 55 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 CFL2Q9Y281 166 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 STK38LQ9Y2H1 464 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 KLF13Q9Y2Y9 288 aaPredicted RBP2.26□□□□□ -2.05
USP48-209ENST00000487880 ORC6Q9Y5N6 252 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 TMEM131LA2VDJ0 1609 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 PIK3C2BO00750 1634 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 LRRC37A3O60309 1634 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 MYH7BA7E2Y1 1941 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 A2ML1A8K2U0 1454 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 PTPRMP28827 1452 aa2.26□□□□□ -2.05
USP48-209ENST00000487880 PARP4Q9UKK3 1724 aaKnown RBP2.25□□□□□ -2.05
USP48-209ENST00000487880 FUOMA2VDF0 154 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 IGLL5B9A064 214 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 M0QX08 132 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 PFDN6O15212 129 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 CPSF4O95639 269 aaKnown RBP2.25□□□□□ -2.05
USP48-209ENST00000487880 CXorf1O96002 111 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 APOEP02649 317 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 SHBGP04278 402 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 SLC6A1P30531 599 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 CDK9P50750 372 aaKnown RBP2.25□□□□□ -2.05
USP48-209ENST00000487880 KLF3P57682 345 aaPredicted RBP2.25□□□□□ -2.05
USP48-209ENST00000487880 PSMC5P62195 406 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 RPL10AP62906 217 aaKnown RBP2.25□□□□□ -2.05
USP48-209ENST00000487880 CAV1Q03135 178 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 APOFQ13790 326 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 PDZD11Q5EBL8 140 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 ACSBG2Q5FVE4 666 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 FAM27D1Q5T7N8 215 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 LIN9Q5TKA1 542 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 DUPD1Q68J44 220 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 CLEC19AQ6UXS0 136 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 TMEM144Q7Z5S9 345 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 LY6G5BQ8NDX9 201 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 OR7G1Q8NGA0 311 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 OR51A7Q8NH64 312 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 ZNF75CPQ92670 426 aaPredicted RBP2.25□□□□□ -2.05
USP48-209ENST00000487880 CDKL2Q92772 493 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 CEP19Q96LK0 163 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 SELENOSQ9BQE4 189 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 THTPAQ9BU02 230 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 MRPL20Q9BYC9 149 aaKnown RBP2.25□□□□□ -2.05
USP48-209ENST00000487880 NKIRAS1Q9NYS0 192 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 SLC7A11Q9UPY5 501 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 TIMM22Q9Y584 194 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 RGPD1P0DJD0 1748 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 DDX60Q8IY21 1712 aaKnown RBP2.25□□□□□ -2.05
USP48-209ENST00000487880 ZNF609O15014 1411 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 MYH7P12883 1935 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 MYH8P13535 1937 aa2.25□□□□□ -2.05
USP48-209ENST00000487880 NLRC5Q86WI3 1866 aa2.24□□□□□ -2.05
USP48-209ENST00000487880 PHRF1Q9P1Y6 1649 aaKnown RBP2.24□□□□□ -2.05
USP48-209ENST00000487880 ALKQ9UM73 1620 aa2.24□□□□□ -2.05
USP48-209ENST00000487880 MAP2P11137 1827 aaKnown RBP2.24□□□□□ -2.05
USP48-209ENST00000487880 WNK3Q9BYP7 1800 aa2.24□□□□□ -2.05
USP48-209ENST00000487880 MAP3K19Q56UN5 1328 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms