RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 LTC4SQ16873 150 aa11.92□□□□□ -0.5
MCF2L-228ENST00000487354 FAM71E2Q8N5Q1 922 aa11.92□□□□□ -0.5
MCF2L-228ENST00000487354 OR51A4Q8NGJ6 313 aa11.92□□□□□ -0.5
MCF2L-228ENST00000487354 RFESDQ8TAC1 157 aa11.92□□□□□ -0.5
MCF2L-228ENST00000487354 HAVCR2Q8TDQ0 301 aa11.92□□□□□ -0.5
MCF2L-228ENST00000487354 FGGYQ96C11 551 aa11.92□□□□□ -0.5
MCF2L-228ENST00000487354 ISYNA1Q9NPH2 558 aa11.92□□□□□ -0.5
MCF2L-228ENST00000487354 ZNF581Q9P0T4 197 aa11.92□□□□□ -0.5
MCF2L-228ENST00000487354 ZNF580Q9UK33 172 aa11.92□□□□□ -0.5
MCF2L-228ENST00000487354 MEIKINA0A087WXM9 373 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 TRAV39A0A0B4J263 110 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 TRIM64CA6NLI5 447 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 AQP12BA6NM10 295 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 NCBP2LA6PVI3 153 aaKnown RBP11.91□□□□□ -0.5
MCF2L-228ENST00000487354 ZNF736B4DX44 427 aaPredicted RBP11.91□□□□□ -0.5
MCF2L-228ENST00000487354 DEGS1O15121 323 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 MT-ND2P03891 347 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 SPNP16150 400 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 NANOS3P60323 173 aaKnown RBP11.91□□□□□ -0.5
MCF2L-228ENST00000487354 RUNX1Q01196 453 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 TP53I3Q53FA7 332 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 AQP12AQ8IXF9 295 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 SAXO1Q8IYX7 474 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 OR2G2Q8NGZ5 317 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 MRGPRDQ8TDS7 321 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 DNAJC9Q8WXX5 260 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 ST6GALNAC6Q969X2 333 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 IL4I1Q96RQ9 567 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 S1PR3Q99500 378 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 ADI1Q9BV57 179 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 GON7Q9BXV9 100 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 KLK15Q9H2R5 256 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 RHOFQ9HBH0 211 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 ARL2BPQ9Y2Y0 163 aa11.91□□□□□ -0.5
MCF2L-228ENST00000487354 FRAS1Q86XX4 4008 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 H0YJX3 145 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 FKBP6O75344 327 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 IGF1P05019 195 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 ISG15P05161 165 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 OR2T7P0C7T2 308 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 T-ENOLP0DO92 83 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 PPIFP30405 207 aaKnown RBP11.9□□□□□ -0.5
MCF2L-228ENST00000487354 BNIP1Q12981 228 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 MOB3BQ86TA1 216 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 GID4Q8IVV7 300 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 OR13C9Q8NGT0 318 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 OR10X1Q8NGY0 326 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 RNFT2Q96EX2 444 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 LRGUKQ96M69 825 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 KCTD7Q96MP8 289 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 MED4Q9NPJ6 270 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 FRRS1LQ9P0K9 344 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 WARS2Q9UGM6 360 aaKnown RBP11.9□□□□□ -0.5
MCF2L-228ENST00000487354 MYRFQ9Y2G1 1151 aa11.9□□□□□ -0.5
MCF2L-228ENST00000487354 MPZL2O60487 215 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 DCTN3O75935 186 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 OR8U8P0C7N1 319 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 GP9P14770 177 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 MNAT1P51948 309 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 F2RL1P55085 397 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 PAN3Q58A45 887 aaKnown RBP11.89□□□□□ -0.51
MCF2L-228ENST00000487354 SLC16A12Q6ZSM3 486 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 ZNF429Q86V71 674 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 ZNF491Q8N8L2 437 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 OR10H4Q8NGA5 316 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 OR10A7Q8NGE5 316 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 OR2T10Q8NGZ9 312 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 CNIH3Q8TBE1 160 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 RTN4IP1Q8WWV3 396 aaPredicted RBP11.89□□□□□ -0.51
MCF2L-228ENST00000487354 DCUN1D4Q92564 292 aa11.89□□□□□ -0.51
MCF2L-228ENST00000487354 H2AFY2Q9P0M6 372 aaPredicted RBP11.89□□□□□ -0.51
MCF2L-228ENST00000487354 RRP9O43818 475 aaKnown RBP11.88□□□□□ -0.51
MCF2L-228ENST00000487354 GAPDHP04406 335 aaKnown RBP11.88□□□□□ -0.51
MCF2L-228ENST00000487354 ZNF20P17024 532 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 C21orf33P30042 268 aaPredicted RBP11.88□□□□□ -0.51
MCF2L-228ENST00000487354 VHLP40337 213 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 ZNF616Q08AN1 781 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 HSP90B2PQ58FF3 399 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 TMEM244Q5VVB8 128 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 ELP2Q6IA86 826 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 FDX2Q6P4F2 183 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 LINC00311Q8N616 119 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 ZNF565Q8N9K5 539 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 OR1N2Q8NGR9 330 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 UTP4Q969X6 686 aaKnown RBP11.88□□□□□ -0.51
MCF2L-228ENST00000487354 NRBF2Q96F24 287 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 UBE2E2Q96LR5 201 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 PRRG3Q9BZD7 231 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 ZMAT4Q9H898 229 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 GNG8Q9UK08 70 aa11.88□□□□□ -0.51
MCF2L-228ENST00000487354 TCRBV3S1A0A5B6 114 aa11.87□□□□□ -0.51
MCF2L-228ENST00000487354 C15orf65H3BRN8 121 aa11.87□□□□□ -0.51
MCF2L-228ENST00000487354 SLC31A2O15432 143 aa11.87□□□□□ -0.51
MCF2L-228ENST00000487354 MOSP00540 346 aa11.87□□□□□ -0.51
MCF2L-228ENST00000487354 IGLV1-40P01703 118 aa11.87□□□□□ -0.51
MCF2L-228ENST00000487354 VDAC1P21796 283 aa11.87□□□□□ -0.51
MCF2L-228ENST00000487354 CD1BP29016 333 aa11.87□□□□□ -0.51
MCF2L-228ENST00000487354 MTNR1BP49286 362 aa11.87□□□□□ -0.51
MCF2L-228ENST00000487354 FAM27D1Q5T7N8 215 aa11.87□□□□□ -0.51
MCF2L-228ENST00000487354 NSL1Q96IY1 281 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms