RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 OR52K1Q8NGK4 314 aa0.79□□□□□ -2.28
VPS50-217ENST00000485140 CLHC1Q8NHS4 586 aa0.79□□□□□ -2.28
VPS50-217ENST00000485140 PDCD6IPQ8WUM4 868 aaKnown RBP0.79□□□□□ -2.28
VPS50-217ENST00000485140 KCTD4Q8WVF5 259 aa0.79□□□□□ -2.28
VPS50-217ENST00000485140 CDKL2Q92772 493 aa0.79□□□□□ -2.28
VPS50-217ENST00000485140 COPS4Q9BT78 406 aa0.79□□□□□ -2.28
VPS50-217ENST00000485140 GAL3ST2Q9H3Q3 398 aa0.79□□□□□ -2.28
VPS50-217ENST00000485140 TUBG2Q9NRH3 451 aa0.79□□□□□ -2.28
VPS50-217ENST00000485140 FAM206AQ9NX38 181 aa0.79□□□□□ -2.28
VPS50-217ENST00000485140 POMPQ9Y244 141 aa0.79□□□□□ -2.28
VPS50-217ENST00000485140 LINC00588Q9Y4M8 146 aa0.79□□□□□ -2.28
VPS50-217ENST00000485140 ATRNO75882 1429 aa0.79□□□□□ -2.28
VPS50-217ENST00000485140 IGHV3OR15-7A0A075B7D8 119 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 LOC102725191A0A1B0GVB3 256 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 A0A1B0GXF2 115 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 ODF3BA8MYP8 253 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 UBDO15205 165 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 TRAPPC3O43617 180 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 ENSAO43768 121 aaKnown RBP0.78□□□□□ -2.28
VPS50-217ENST00000485140 SOX14O95416 240 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 CA2P00918 260 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 CD8AP01732 235 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 NQO1P15559 274 aaKnown RBP0.78□□□□□ -2.28
VPS50-217ENST00000485140 M6PRP20645 277 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 GTF2H1P32780 548 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 DEKP35659 375 aaKnown RBP0.78□□□□□ -2.28
VPS50-217ENST00000485140 COILP38432 576 aaPredicted RBP0.78□□□□□ -2.28
VPS50-217ENST00000485140 RANBP1P43487 201 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 HSPA13P48723 471 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 APOFQ13790 326 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 N4BP2L1Q5TBK1 243 aaPredicted RBP0.78□□□□□ -2.28
VPS50-217ENST00000485140 ELP2Q6IA86 826 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 OLIG3Q7RTU3 272 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 MARCH3Q86UD3 253 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 SLC25A45Q8N413 288 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 DTD1Q8TEA8 209 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 CAPZA3Q96KX2 299 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 BIRC8Q96P09 236 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 CIB1Q99828 191 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 TSSK6Q9BXA6 273 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 CHRNA10Q9GZZ6 450 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 SYT4Q9H2B2 425 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 ANKHQ9HCJ1 492 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 BTRCQ9Y297 605 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 CHTOPQ9Y3Y2 248 aaKnown RBP0.78□□□□□ -2.28
VPS50-217ENST00000485140 TTC41PQ6P2S7 1318 aa0.78□□□□□ -2.28
VPS50-217ENST00000485140 GBF1Q92538 1859 aa0.78□□□□□ -2.29
VPS50-217ENST00000485140 LCTP09848 1927 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 MPDZO75970 2070 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 RP1L1Q8IWN7 2480 aaPredicted RBP0.77□□□□□ -2.29
VPS50-217ENST00000485140 IGKV1D-43A0A0B4J1Z2 117 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 A0A0J9YX75 114 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 GMDSO60547 372 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 PDCD6O75340 191 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 SNAI1O95863 264 aaPredicted RBP0.77□□□□□ -2.29
VPS50-217ENST00000485140 GPX1P07203 203 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 OR4A8P0C604 315 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 EVI2BP34910 448 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 GABRA4P48169 554 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 DNASE1L1P49184 302 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 AKR1C2P52895 323 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 HBG1P69891 147 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 HBG2P69892 147 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 TSPAN31Q12999 210 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 GUSBP1Q15486 140 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 OR8G1Q15617 311 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 SSX7Q7RTT5 188 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 SELENOHQ8IZQ5 122 aaKnown RBP0.77□□□□□ -2.29
VPS50-217ENST00000485140 OR4K17Q8NGC6 315 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 OR4X1Q8NH49 305 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 ERMNQ8TAM6 284 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 DCANP1Q8TF63 244 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 CACNG8Q8WXS5 425 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 KIAA1143Q96AT1 154 aaPredicted RBP0.77□□□□□ -2.29
VPS50-217ENST00000485140 GLT1D1Q96MS3 346 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 SUCNR1Q9BXA5 334 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 TM6SF2Q9BZW4 377 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 TXNL4BQ9NX01 149 aaKnown RBP0.77□□□□□ -2.29
VPS50-217ENST00000485140 ADAMTSL3P82987 1691 aa0.77□□□□□ -2.29
VPS50-217ENST00000485140 ATG2BQ96BY7 2078 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 CR1P17927 2039 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 SHANK3Q9BYB0 1731 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 ADAMTS7Q9UKP4 1686 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 GOLGA6L7A0A1B0GV03 622 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 IGSF23A1L1A6 192 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 K7EN84 100 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 RFXANKO14593 260 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 STAG3L2P0CL84 134 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 ZNF7P17097 686 aaPredicted RBP0.76□□□□□ -2.29
VPS50-217ENST00000485140 RPA3P35244 121 aaPredicted RBP0.76□□□□□ -2.29
VPS50-217ENST00000485140 SPAM1P38567 509 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 EMP2P54851 167 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 PLTPP55058 493 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 RWDD2BP57060 319 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 RHOAP61586 193 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 ZNF117Q03924 483 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 HBMQ6B0K9 141 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 LAMTOR1Q6IAA8 161 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 C16orf87Q6PH81 154 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 Q6ZRU5 148 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms