RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 TRAV39A0A0B4J263 110 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 PPIAL4CA0A0B4J2A2 164 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 A0A1W2PQ09 198 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 hADV38S2A0JD32 116 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 MEX3AA1L020 520 aaKnown RBP10.11□□□□□ -0.79
SDC1-206ENST00000482879 FABP12A6NFH5 140 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 MELTFP08582 738 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 PPIAL4GP0DN37 164 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 IGHV4-31P0DP07 118 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 PTHLHP12272 177 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 GZMKP49863 264 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 PITPNAQ00169 270 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 IL18Q14116 193 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 TMEM200BQ69YZ2 307 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 BAIAP2L2Q6UXY1 529 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 LINC01356Q8N9X3 169 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 OR4K15Q8NH41 348 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 C8orf46Q8TAG6 207 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 SETD6Q8TBK2 473 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 MRPL30Q8TCC3 161 aaKnown RBP10.11□□□□□ -0.79
SDC1-206ENST00000482879 NUDCD2Q8WVJ2 157 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 NCOR1P1Q9H4R4 102 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 OR6C3Q9NZP0 311 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 LPAR3Q9UBY5 353 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 TRAPPC2LQ9UL33 140 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 POLR3KQ9Y2Y1 108 aaPredicted RBP10.11□□□□□ -0.79
SDC1-206ENST00000482879 VPS13CQ709C8 3753 aa10.11□□□□□ -0.79
SDC1-206ENST00000482879 TRGV10A0A0A0MS01 117 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 A0A0G2JMP0 313 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 A0A0X1KG70 313 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 ENSAO43768 121 aaKnown RBP10.1□□□□□ -0.79
SDC1-206ENST00000482879 TPPPO94811 219 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 NAPSAO96009 420 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 MSMBP08118 114 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 PRSS3P35030 304 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 GLP1RP43220 463 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 SPANXN2Q5MJ10 180 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 CYB5R2Q6BCY4 276 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 PYHIN1Q6K0P9 492 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 FAM131AQ6UXB0 335 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 TRAPPC6BQ86SZ2 158 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 CCDC190Q86UF4 302 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 GAPTQ8N292 157 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 ZNF565Q8N9K5 539 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 LY6G5BQ8NDX9 201 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 OR4M2Q8NGB6 313 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 OR13A1Q8NGR1 328 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 MRGPRDQ8TDS7 321 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 C15orf40Q8WUR7 153 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 MSI2Q96DH6 328 aaKnown RBP10.1□□□□□ -0.79
SDC1-206ENST00000482879 ABHD1Q96SE0 405 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 SOSTQ9BQB4 213 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 C12orf4Q9NQ89 552 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 MMP26Q9NRE1 261 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 RABL2AQ9UBK7 228 aaPredicted RBP10.1□□□□□ -0.79
SDC1-206ENST00000482879 RABL2BQ9UNT1 228 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 LINC00312Q9Y6C7 94 aa10.1□□□□□ -0.79
SDC1-206ENST00000482879 TEX15Q9BXT5 2789 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 TRBV6-6A0A0A6YYG2 114 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 TRAV20A0A0B4J274 112 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 IGHV2-70DA0A0C4DH43 119 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 KIR2DS1A0A191URI9 304 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 SSX5O60225 188 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 TGFAP01135 160 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 LIPFP07098 398 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 RCC1P18754 421 aaPredicted RBP10.09□□□□□ -0.79
SDC1-206ENST00000482879 GUCA2AQ02747 115 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 PAX2Q02962 417 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 ZNF273Q14593 569 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 BTNL3Q6UXE8 466 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 SPNS3Q6ZMD2 512 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 LINC00299Q6ZSB3 139 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 CORO2AQ92828 525 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 GCDHQ92947 438 aaPredicted RBP10.09□□□□□ -0.79
SDC1-206ENST00000482879 COX4I2Q96KJ9 171 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 KCNIP1Q9NZI2 227 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 ZNF230Q9UIE0 474 aaPredicted RBP10.09□□□□□ -0.79
SDC1-206ENST00000482879 UBE2J1Q9Y385 318 aaPredicted RBP10.09□□□□□ -0.79
SDC1-206ENST00000482879 TLN2Q9Y4G6 2542 aa10.09□□□□□ -0.79
SDC1-206ENST00000482879 A0A1W2PPH5 198 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 MEIOCA2RUB1 952 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 MEIS3P1A6NDR6 274 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 POM121CA8CG34 1229 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 FCGR3AP08637 254 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 ZNF728P0DKX0 622 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 CCL3L1P16619 93 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 GZMHP20718 246 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 DTYMKP23919 212 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 ETV6P41212 452 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 CBX5P45973 191 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 DVL1P1P54792 670 aaPredicted RBP10.08□□□□□ -0.8
SDC1-206ENST00000482879 ARF6P62330 175 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 RNASE12Q5GAN4 147 aaKnown RBP10.08□□□□□ -0.8
SDC1-206ENST00000482879 C6orf183Q5T699 404 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 ZNF880Q6PDB4 577 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 MOB1BQ7L9L4 216 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 TCF23Q7RTU1 214 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 GLCCI1Q86VQ1 547 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 DACT3Q96B18 629 aaPredicted RBP10.08□□□□□ -0.8
SDC1-206ENST00000482879 TMEM186Q96B77 213 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms