RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 UCP3P55916 312 aa16.27■□□□□ 0.19
VIM-203ENST00000469543 PCSK4Q6UW60 755 aa16.27■□□□□ 0.19
VIM-203ENST00000469543 ZNF695Q8IW36 515 aa16.27■□□□□ 0.19
VIM-203ENST00000469543 ZNF565Q8N9K5 539 aa16.27■□□□□ 0.19
VIM-203ENST00000469543 KIRREL1Q96J84 757 aa16.27■□□□□ 0.19
VIM-203ENST00000469543 RCC2Q9P258 522 aaKnown RBP16.27■□□□□ 0.19
VIM-203ENST00000469543 CD46P15529 392 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 ZNF44P15621 663 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 IDH3GP51553 393 aaPredicted RBP16.26■□□□□ 0.19
VIM-203ENST00000469543 CLRN3Q8NCR9 226 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 OR4D5Q8NGN0 318 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 MRPL30Q8TCC3 161 aaKnown RBP16.26■□□□□ 0.19
VIM-203ENST00000469543 BCL2L2Q92843 193 aaPredicted RBP16.26■□□□□ 0.19
VIM-203ENST00000469543 AKR1E2Q96JD6 320 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 FER1L6-AS2Q96M78 137 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 ATPIF1Q9UII2 106 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 SSSCA1O60232 199 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 TMEM50AO95807 157 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 CCL11P51671 97 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 TMEM217Q8N7C4 229 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 UBAC2Q8NBM4 344 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 SAT2Q96F10 170 aaPredicted RBP16.26■□□□□ 0.19
VIM-203ENST00000469543 PLEKHA2Q9HB19 425 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 PLSCR2Q9NRY7 297 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 OR1A1Q9P1Q5 309 aa16.26■□□□□ 0.19
VIM-203ENST00000469543 TFF1P04155 84 aa16.25■□□□□ 0.19
VIM-203ENST00000469543 MIDNQ504T8 468 aa16.25■□□□□ 0.19
VIM-203ENST00000469543 P4HA3Q7Z4N8 544 aa16.25■□□□□ 0.19
VIM-203ENST00000469543 CXorf67Q86X51 503 aaPredicted RBP16.25■□□□□ 0.19
VIM-203ENST00000469543 SELENOHQ8IZQ5 122 aaKnown RBP16.25■□□□□ 0.19
VIM-203ENST00000469543 OR51H1Q8NH63 302 aa16.25■□□□□ 0.19
VIM-203ENST00000469543 ABHD14AQ9BUJ0 271 aa16.25■□□□□ 0.19
VIM-203ENST00000469543 PURGQ9UJV8 347 aaKnown RBP16.25■□□□□ 0.19
VIM-203ENST00000469543 ATP23Q9Y6H3 246 aa16.25■□□□□ 0.19
VIM-203ENST00000469543 TRDCB7Z8K6 153 aa16.25■□□□□ 0.19
VIM-203ENST00000469543 CST7O76096 145 aa16.25■□□□□ 0.19
VIM-203ENST00000469543 TRIP6Q15654 476 aaKnown RBP16.25■□□□□ 0.19
VIM-203ENST00000469543 C10orf91Q5T1B1 145 aa16.25■□□□□ 0.19
VIM-203ENST00000469543 EIF5AL1Q6IS14 154 aaKnown RBP16.25■□□□□ 0.19
VIM-203ENST00000469543 FAM53AQ6NSI3 398 aaPredicted RBP16.25■□□□□ 0.19
VIM-203ENST00000469543 IL34Q6ZMJ4 242 aa16.25■□□□□ 0.19
VIM-203ENST00000469543 FAM58AQ8N1B3 248 aa16.25■□□□□ 0.19
VIM-203ENST00000469543 CCDC71LQ8N9Z2 235 aa16.25■□□□□ 0.19
VIM-203ENST00000469543 ESRP2Q9H6T0 727 aaKnown RBP16.25■□□□□ 0.19
VIM-203ENST00000469543 ERRFI1Q9UJM3 462 aaPredicted RBP16.25■□□□□ 0.19
VIM-203ENST00000469543 A0A0G2JRQ6 117 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 PROB1E7EW31 1015 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 SIRPB1O00241 398 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 COX5BP10606 129 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 SWI5Q1ZZU3 235 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 TMEM9BQ9NQ34 198 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 DLL3Q9NYJ7 618 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 TMED3Q9Y3Q3 217 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 H0YL77 283 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 CDIPTO14735 213 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 GAPDHP04406 335 aaKnown RBP16.24■□□□□ 0.19
VIM-203ENST00000469543 CEBPDP49716 269 aaPredicted RBP16.24■□□□□ 0.19
VIM-203ENST00000469543 PPT1P50897 306 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 TMEM171Q8WVE6 324 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 FBXO9Q9UK97 447 aaPredicted RBP16.24■□□□□ 0.19
VIM-203ENST00000469543 KALRNO60229 2985 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 PIEZO2Q9H5I5 2752 aa16.24■□□□□ 0.19
VIM-203ENST00000469543 IGSF23A1L1A6 192 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 SLC34A2O95436 690 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 WT1P19544 449 aaPredicted RBP16.23■□□□□ 0.19
VIM-203ENST00000469543 SEC11CQ9BY50 192 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 OR51I2Q9H344 312 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 CARHSP1Q9Y2V2 147 aaKnown RBP16.23■□□□□ 0.19
VIM-203ENST00000469543 GPR137BO60478 399 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 AGFG2O95081 481 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 PRH1P02810 166 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 CD5P06127 495 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 EPHA1P21709 976 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 SOX8P57073 446 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 GNG3P63215 75 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 EIF5AP63241 154 aaKnown RBP16.23■□□□□ 0.19
VIM-203ENST00000469543 EWSR1Q01844 656 aaKnown RBP eCLIP16.23■□□□□ 0.19
VIM-203ENST00000469543 BOD1Q96IK1 185 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 FAM86C1Q9NVL1 165 aa16.23■□□□□ 0.19
VIM-203ENST00000469543 INTS1Q8N201 2190 aaKnown RBP16.23■□□□□ 0.19
VIM-203ENST00000469543 SPAARA0A1B0GVQ0 90 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 H3BP45 60 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 PGLYRP1O75594 196 aaPredicted RBP16.22■□□□□ 0.19
VIM-203ENST00000469543 CDS2O95674 445 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 NKX2-1P43699 371 aaPredicted RBP16.22■□□□□ 0.19
VIM-203ENST00000469543 GNMTQ14749 295 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 ODF3L1Q8IXM7 274 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 OR2C3Q8N628 320 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 FDCSPQ8NFU4 85 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 GP6Q9HCN6 339 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 PARP11Q9NR21 331 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 POMT1Q9Y6A1 747 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 USF3Q68DE3 2245 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 FAM157AC9JC47 383 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 GRPP07492 148 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 IGHV1-2P23083 117 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 F2RL1P55085 397 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 MPV17LQ2QL34 196 aa16.22■□□□□ 0.19
VIM-203ENST00000469543 TMEM182Q6ZP80 229 aaPredicted RBP16.22■□□□□ 0.19
VIM-203ENST00000469543 SAXO1Q8IYX7 474 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms