RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 GPR148Q8TDV2 347 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 NRBF2Q96F24 287 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 ATP6V1G3Q96LB4 118 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 RAB40CQ96S21 281 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 SERPINI1Q99574 410 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 PKIBQ9C010 78 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 Q9H3A6 140 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 SLCO1B3Q9NPD5 702 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 TECRQ9NZ01 308 aaKnown RBP3.35□□□□□ -1.87
HMGB1-207ENST00000468384 BFARQ9NZS9 450 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 ZNF391Q9UJN7 358 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 PRDM4Q9UKN5 801 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 FAF1Q9UNN5 650 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-207ENST00000468384 DIMT1Q9UNQ2 313 aaKnown RBP3.35□□□□□ -1.87
HMGB1-207ENST00000468384 NDUFAF1Q9Y375 327 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 DSCAML1Q8TD84 2053 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 A0A1W2PS18 150 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 GGT3PA6NGU5 568 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 ACOD1A6NK06 481 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 PRAC2D3DTV9 90 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 APOC4-APOC2K7ER74 178 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 AKR7A2O43488 359 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 CSTAP01040 98 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 APOC2P02655 101 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 MT-ND1P03886 318 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 SCTP09683 121 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 PRPS2P11908 318 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 HTR1DP28221 377 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 NUP62P37198 522 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-207ENST00000468384 SLC1A2P43004 574 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 PTGFRP43088 359 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 IDH2P48735 452 aaKnown RBP3.34□□□□□ -1.87
HMGB1-207ENST00000468384 SYNJ2BPP57105 145 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 CBX1P83916 185 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 NAB1Q13506 487 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 MEF2DQ14814 521 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 BEND6Q5SZJ8 279 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-207ENST00000468384 LCN1P1Q5VSP4 162 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 STUMQ69YW2 141 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 ZNF660Q6AZW8 331 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-207ENST00000468384 NANOGP8Q6NSW7 305 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 EMBQ6PCB8 327 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 COMMD6Q7Z4G1 85 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 RIMKLAQ8IXN7 391 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 OFCC1Q8IZS5 231 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 METTL4Q8N3J2 472 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 LRRC18Q8N456 261 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 BPIFCQ8NFQ6 507 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 OR5T2Q8NGG2 359 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 SECTM1Q8WVN6 248 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 C12orf43Q96C57 262 aaKnown RBP3.34□□□□□ -1.87
HMGB1-207ENST00000468384 MED30Q96HR3 178 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 ST6GAL2Q96JF0 529 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 FAM210AQ96ND0 272 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 GAFA1Q96PS6 74 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 ERGIC2Q96RQ1 377 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 CNN2Q99439 309 aaKnown RBP3.34□□□□□ -1.87
HMGB1-207ENST00000468384 KIFC1Q9BW19 673 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 ABCG5Q9H222 651 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 ZC4H2Q9NQZ6 224 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 C20orf96Q9NUD7 363 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-207ENST00000468384 AHSPQ9NZD4 102 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 ZNF319Q9P2F9 582 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 RWDD2AQ9UIY3 292 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 PPP2R2CQ9Y2T4 447 aa3.34□□□□□ -1.87
HMGB1-207ENST00000468384 A0A087WUV0 522 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-207ENST00000468384 C17orf98A8MV24 154 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 IQCF6A8MYZ5 107 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 SDHDO14521 159 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 C6orf47O95873 294 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 IGLV2-8P01709 118 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 IGHV3-11P01762 117 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 TFF1P04155 84 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 APRTP07741 180 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 ZNF32P17041 273 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 ZP3P21754 424 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 ANOS1P23352 680 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 HTR2AP28223 471 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 CSNK1A1P48729 337 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 HERV-K104P61576 105 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 PSG4Q00888 419 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 SRSF9Q13242 221 aaKnown RBP eCLIP3.33□□□□□ -1.88
HMGB1-207ENST00000468384 USF2Q15853 346 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-207ENST00000468384 FRA10AC1Q70Z53 315 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 ZNF571Q7Z3V5 609 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-207ENST00000468384 TCAIMQ8N3R3 496 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 FAM89BQ8N5H3 189 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 IQCF1Q8N6M8 205 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 TCEANCQ8N8B7 351 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 ACTL9Q8TC94 416 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 SLC7A6Q92536 515 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 BPIFA3Q9BQP9 254 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 IL22Q9GZX6 179 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 DNTTIP1Q9H147 329 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 SLC25A19Q9HC21 320 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 CCNB1IP1Q9NPC3 277 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 DPM3Q9P2X0 92 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 ELF5Q9UKW6 265 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-207ENST00000468384 CELA1Q9UNI1 258 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 SIGLEC7Q9Y286 467 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms