RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 TMEM59Q9BXS4 323 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 CST11Q9H112 138 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 HEXA-AS1Q9H8Q6 139 aa9.5□□□□□ -0.89
CUX1-207ENST00000465461 UBE2J1Q9Y385 318 aaPredicted RBP9.5□□□□□ -0.89
CUX1-207ENST00000465461 TMEM272A0A1B0GTI8 110 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 hCG_1809904A0A1W2PP81 198 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 A0A1W2PPE2 198 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 A0A1W2PR64 198 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 A0A1W2PRV1 198 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 FUOMA2VDF0 154 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 MCRIP1C9JLW8 97 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 SOCS1O15524 211 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 CLPXO76031 633 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 BPNT1O95861 308 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 ARG1P05089 322 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 MELTFP08582 738 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 UBBP0CG47 229 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 CGB3P0DN86 165 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 CGB7P0DN87 165 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 GALP22466 123 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 CDK2P24941 298 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 FGF9P31371 208 aaPredicted RBP9.49□□□□□ -0.89
CUX1-207ENST00000465461 SDC2P34741 201 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 SSTR5P35346 364 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 BPIFB3P59826 476 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 LSM3P62310 102 aaKnown RBP9.49□□□□□ -0.89
CUX1-207ENST00000465461 UBA52P62987 128 aaKnown RBP9.49□□□□□ -0.89
CUX1-207ENST00000465461 DYNC1I2Q13409 638 aaKnown RBP9.49□□□□□ -0.89
CUX1-207ENST00000465461 LDLRAD2Q5SZI1 272 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 SLC35E4Q6ICL7 350 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 FAM53AQ6NSI3 398 aaPredicted RBP9.49□□□□□ -0.89
CUX1-207ENST00000465461 Q6YL49 198 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 USP43Q70EL4 1123 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 C6orf201Q7Z4U5 140 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 OR4K15Q8NH41 348 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 KCNG3Q8TAE7 436 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 LEAP2Q969E1 77 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 FAM3DQ96BQ1 224 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 YIPF6Q96EC8 236 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 FAAP24Q9BTP7 215 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 LPAR5Q9H1C0 372 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 ETAA1Q9NY74 926 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 ZNRD1Q9P1U0 126 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 RCC2Q9P258 522 aaKnown RBP9.49□□□□□ -0.89
CUX1-207ENST00000465461 STEAP1Q9UHE8 339 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 FAM96BQ9Y3D0 163 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 SESN1Q9Y6P5 492 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 MXRA5Q9NR99 2828 aa9.49□□□□□ -0.89
CUX1-207ENST00000465461 A0A0A6YYJ9 748 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 TMEM30CPA0ZSE6 113 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 TRIM64CA6NLI5 447 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 IFITM5A6NNB3 132 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 MT-ND4P03905 459 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 JUNBP17275 347 aaPredicted RBP9.48□□□□□ -0.89
CUX1-207ENST00000465461 FUT3P21217 361 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 NFYBP25208 207 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 BLVRBP30043 206 aaPredicted RBP9.48□□□□□ -0.89
CUX1-207ENST00000465461 EFNB2P52799 333 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 PLA1AQ53H76 456 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 ZNF497Q6ZNH5 498 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 DYNAPQ8N1N2 210 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 OR13D1Q8NGV5 346 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 TMEM158Q8WZ71 300 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 SULT4A1Q9BR01 284 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 C19orf24Q9BVV8 132 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 TM2D1Q9BX74 207 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 TMEM133Q9H2Q1 129 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 GAL3ST2Q9H3Q3 398 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 TAS2R3Q9NYW6 316 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 CALYQ9NYX4 217 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 OR6C3Q9NZP0 311 aa9.48□□□□□ -0.89
CUX1-207ENST00000465461 IGHV2-26A0A0B4J1V2 119 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 KBTBD11-OT1A0A1B0GTJ5 212 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A10PA6NDY2 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A18PA6NE21 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A16PA6NEW6 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A20PA6NIJ5 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A8PA6NJQ4 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A7PA6NKC0 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 ZNF729A6NN14 1252 aaPredicted RBP9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A22PA8MWA6 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A12PA8MX19 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A5PA8MXJ8 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A23PA8MXZ1 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 TRIM77I1YAP6 450 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 AIPO00170 330 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 LDLRAD4O15165 306 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 PDCD6O75340 191 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 IGHV4-59P01825 116 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A15PP0C7V4 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A13PP0C7W8 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A14PP0C7W9 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 FAM90A24PP0C7X0 464 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 CHATP28329 748 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 KCNJ3P48549 501 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 VEGFCP49767 419 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 PSMD7P51665 324 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 RBM39Q14498 530 aaKnown RBP9.47□□□□□ -0.89
CUX1-207ENST00000465461 HEPN1Q6WQI6 88 aa9.47□□□□□ -0.89
CUX1-207ENST00000465461 OR2W3Q7Z3T1 314 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms