RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TCF23Q7RTU1 214 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 FAM220AQ7Z4H9 259 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 DYNAPQ8N1N2 210 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 Q8N2B8 174 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 PRSS35Q8N3Z0 413 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 DNAAF1Q8NEP3 725 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 OR10H4Q8NGA5 316 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 TRUB1Q8WWH5 349 aaKnown RBP5.82□□□□□ -1.48
USP54-208ENST00000461520 EMG1Q92979 244 aaKnown RBP5.82□□□□□ -1.48
USP54-208ENST00000461520 SLAMF9Q96A28 289 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 EME1Q96AY2 570 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 CENPNQ96H22 339 aaPredicted RBP5.82□□□□□ -1.48
USP54-208ENST00000461520 NKX3-1Q99801 234 aaPredicted RBP5.82□□□□□ -1.48
USP54-208ENST00000461520 ZNF702PQ9H963 129 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 LINC00312Q9Y6C7 94 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 MINOS1-NBL1R4GNA1 71 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 TRBV2A0A0J9YWF9 115 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 LOC107986453A0A1B0GWG9 222 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 H3BSH0 61 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 HAND1O96004 215 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 ISG15P05161 165 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 PRKACBP22694 351 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 GABRR1P24046 479 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 ERP29P30040 261 aaKnown RBP5.81□□□□□ -1.48
USP54-208ENST00000461520 RAB13P51153 203 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 OR12D2P58182 307 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 CDC42P60953 191 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 ACTA2P62736 377 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 ACTG2P63267 376 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 ACTC1P68032 377 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 ACTA1P68133 377 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 ZNF85Q03923 595 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 EMX1Q04741 257 aaPredicted RBP5.81□□□□□ -1.48
USP54-208ENST00000461520 DYNC1I2Q13409 638 aaKnown RBP5.81□□□□□ -1.48
USP54-208ENST00000461520 EDDM3AQ14507 147 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 ZNF146Q15072 292 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 GRK1Q15835 563 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 SSX2Q16385 188 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 SPIN3Q5JUX0 258 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 LDLRAD2Q5SZI1 272 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 KPRPQ5T749 579 aaPredicted RBP5.81□□□□□ -1.48
USP54-208ENST00000461520 UTS2BQ765I0 119 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 RDH10Q8IZV5 341 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 FAM58AQ8N1B3 248 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 ZNF676Q8N7Q3 588 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 SPSB1Q96BD6 273 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 CLEC7AQ9BXN2 247 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 TMEM133Q9H2Q1 129 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 RIBC2Q9H4K1 309 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 HEYLQ9NQ87 328 aaPredicted RBP5.81□□□□□ -1.48
USP54-208ENST00000461520 RBFOX1Q9NWB1 397 aaKnown RBP5.81□□□□□ -1.48
USP54-208ENST00000461520 GLS2Q9UI32 602 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 GNG8Q9UK08 70 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 UBE2J1Q9Y385 318 aaPredicted RBP5.81□□□□□ -1.48
USP54-208ENST00000461520 SESN1Q9Y6P5 492 aa5.81□□□□□ -1.48
USP54-208ENST00000461520 TET2Q6N021 2002 aaPredicted RBP5.81□□□□□ -1.48
USP54-208ENST00000461520 IGHV2-26A0A0B4J1V2 119 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 IGKV1-9A0A0C4DH69 117 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 DAPL1A0PJW8 107 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 MEX3AA1L020 520 aaKnown RBP5.8□□□□□ -1.48
USP54-208ENST00000461520 FUOMA2VDF0 154 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 FAM90A22PA8MWA6 464 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 G3V4G9 280 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 J3QRE1 110 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 XPNPEP2O43895 674 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 ENTPD6O75354 484 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 PEX14O75381 377 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 ALDOBP05062 364 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 PRKACAP17612 351 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 ATF1P18846 271 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 BCL3P20749 454 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 AZGP1P25311 298 aaKnown RBP5.8□□□□□ -1.48
USP54-208ENST00000461520 HTR1DP28221 377 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 KIR3DL2P43630 455 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 NPBWR2P48146 333 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 POU3F4P49335 361 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 CCR9P51686 369 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 MTCP1P56278 107 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 P2RX3P56373 397 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 SLC34A1Q06495 639 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 PDZK1IP1Q13113 114 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 IL18R1Q13478 541 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 TP53I3Q53FA7 332 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 SLC25A30Q5SVS4 291 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 MEDAGQ5VYS4 303 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 OR52W1Q6IF63 320 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 C9orf47Q6ZRZ4 202 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 TMEM219Q86XT9 240 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 NDUFA11Q86Y39 141 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 TPRX1Q8N7U7 411 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 OR4F17Q8NGA8 305 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 OR4S1Q8NGB4 309 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 OR52N4Q8NGI2 321 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 OR2G2Q8NGZ5 317 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 ZNF596Q8TC21 504 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 ADAT3Q96EY9 351 aaPredicted RBP5.8□□□□□ -1.48
USP54-208ENST00000461520 OPALINQ96PE5 141 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 OR4F4Q96R69 305 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 MBOAT4Q96T53 435 aa5.8□□□□□ -1.48
USP54-208ENST00000461520 MYCBPQ99417 103 aaPredicted RBP5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms