RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 C1QTNF9BB2RNN3 333 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 ABCD4O14678 606 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 C1QTNF9P0C862 333 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 S100PP25815 95 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 LFNGQ8NES3 379 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 TMEM54Q969K7 222 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 GNPNAT1Q96EK6 184 aaPredicted RBP10.07□□□□□ -0.8
NPHP4-204ENST00000460696 A0A0A6YYD4 124 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 A0A1W2PPV4 95 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 LOC390937A0A1W2PQ73 354 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 RNF222A6NCQ9 220 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 FAM74A7A6NL05 159 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 SCTP09683 121 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 CSRP1P21291 193 aaKnown RBP10.07□□□□□ -0.8
NPHP4-204ENST00000460696 CEACAM6P40199 344 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 PTGDSP41222 190 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 PMP22Q01453 160 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 FLI1Q01543 452 aaPredicted RBP10.07□□□□□ -0.8
NPHP4-204ENST00000460696 DHODHQ02127 395 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 TLE1Q04724 770 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 RBPJQ06330 500 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 TMEM267Q0VDI3 215 aaPredicted RBP10.07□□□□□ -0.8
NPHP4-204ENST00000460696 FAM74A3Q4VXF1 159 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 PSENENQ9NZ42 101 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 TP53TG5Q9Y2B4 290 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 STRAPQ9Y3F4 350 aaKnown RBP10.07□□□□□ -0.8
NPHP4-204ENST00000460696 SPINT2O43291 252 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 DAOP14920 347 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 TMEM211Q6ICI0 200 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 GFRALQ6UXV0 394 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 BIVMQ86UB2 503 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 LYZL4Q96KX0 146 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 SIGLEC12Q96PQ1 595 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 HEYLQ9NQ87 328 aaPredicted RBP10.06□□□□□ -0.8
NPHP4-204ENST00000460696 TMEM100Q9NV29 134 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 ZGRF1Q86YA3 2104 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 IGHV3-13P01766 116 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 IGHV3-7P01780 117 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 SP1P08047 785 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 MECP2P51608 486 aaKnown RBP10.06□□□□□ -0.8
NPHP4-204ENST00000460696 PDLIM3Q53GG5 364 aaPredicted RBP10.06□□□□□ -0.8
NPHP4-204ENST00000460696 CST9LP1Q5W188 147 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 ASPHD2Q6ICH7 369 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 H2BFWTQ7Z2G1 175 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 SAT2Q96F10 170 aaPredicted RBP10.06□□□□□ -0.8
NPHP4-204ENST00000460696 CACNG5Q9UF02 275 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 TINAGQ9UJW2 476 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 WNK2Q9Y3S1 2297 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 SYNGR1O43759 233 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 CHST1O43916 411 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 METTL15P1P0C7V9 234 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 PPP1CBP62140 327 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 ZNF718Q3SXZ3 478 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 TIPARPQ7Z3E1 657 aaKnown RBP10.06□□□□□ -0.8
NPHP4-204ENST00000460696 OR10V1Q8NGI7 309 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 MYOZ1Q9NP98 299 aaPredicted RBP10.06□□□□□ -0.8
NPHP4-204ENST00000460696 PRSS50Q9UI38 385 aa10.06□□□□□ -0.8
NPHP4-204ENST00000460696 SHANK1Q9Y566 2161 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 DEFB108AA8MXU0 73 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 PTAFRP25105 342 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 DVL1P1P54792 670 aaPredicted RBP10.05□□□□□ -0.8
NPHP4-204ENST00000460696 IL13RA2Q14627 380 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 RIPPLY2Q5TAB7 128 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 UNQ6494/PRO21346Q6UXR6 183 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 OR5B21A6NL26 309 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 C21orf140B9A014 251 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 OR2C1O95371 312 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 FGF2P09038 288 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 NBL1P41271 181 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 KCNMB1Q16558 191 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 MDP1Q86V88 176 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 CALHM1Q8IU99 346 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 PUSL1Q8N0Z8 303 aaKnown RBP10.05□□□□□ -0.8
NPHP4-204ENST00000460696 ISOC2Q96AB3 205 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 S100PBPQ96BU1 408 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 GALMQ96C23 342 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 OR2J1Q9GZK6 312 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 OPA3Q9H6K4 179 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 LIN7CQ9NUP9 197 aaKnown RBP10.05□□□□□ -0.8
NPHP4-204ENST00000460696 MPC1Q9Y5U8 109 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 LOC102723996A0A087X1L8 192 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 IGLV3-32A0A0A0MS00 114 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 TRDCB7Z8K6 153 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 LDLRAD4O15165 306 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 HMGB3O15347 200 aaKnown RBP10.05□□□□□ -0.8
NPHP4-204ENST00000460696 AGFG2O95081 481 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 MZT1Q08AG7 82 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 ZNF273Q14593 569 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 LHFPL5Q8TAF8 219 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 SEMA5BQ9P283 1151 aa10.05□□□□□ -0.8
NPHP4-204ENST00000460696 HEATR1Q9H583 2144 aaKnown RBP10.04□□□□□ -0.8
NPHP4-204ENST00000460696 IGHV3-43A0A0B4J1X8 118 aa10.04□□□□□ -0.8
NPHP4-204ENST00000460696 CLEC18AA5D8T8 446 aa10.04□□□□□ -0.8
NPHP4-204ENST00000460696 RPL36A-HNRNPH2H7BZ11 118 aa10.04□□□□□ -0.8
NPHP4-204ENST00000460696 IL2RAP01589 272 aa10.04□□□□□ -0.8
NPHP4-204ENST00000460696 MBPP02686 304 aaPredicted RBP10.04□□□□□ -0.8
NPHP4-204ENST00000460696 IGHV3-43DP0DP04 118 aa10.04□□□□□ -0.8
NPHP4-204ENST00000460696 VDAC1P21796 283 aa10.04□□□□□ -0.8
NPHP4-204ENST00000460696 OR3A1P47881 315 aa10.04□□□□□ -0.8
NPHP4-204ENST00000460696 RAB5CP51148 216 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms