RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ABHD3Q8WU67 409 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 A1L4Q6 167 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 NCBP2LA6PVI3 153 aaKnown RBP11.74□□□□□ -0.53
USP40-208ENST00000450966 SLC25A17O43808 307 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 COX7A2P2O60397 106 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 TNFSF13O75888 250 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 MARCH3Q86UD3 253 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 MENTQ9BUN1 341 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 UBR3Q6ZT12 1888 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 COL10A1Q03692 680 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 DEFB109BQ30KR1 87 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 COL24A1Q17RW2 1714 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 ESDP10768 282 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 EDDM3BP56851 147 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 RIGQ13278 110 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 TPTE2P1Q5T6R2 138 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 OLIG3Q7RTU3 272 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 C11orf40Q8WZ69 217 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 HIST1H2BLQ99880 126 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 GABRG3Q99928 467 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 PDFQ9HBH1 243 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 SLC6A13Q9NSD5 602 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 AP5S1Q9NUS5 200 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 CLEC1BQ9P126 229 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 COX6CP09669 75 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 TRIP6Q15654 476 aaKnown RBP11.74□□□□□ -0.53
USP40-208ENST00000450966 RFLNAQ6ZTI6 216 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 SLC16A11Q8NCK7 471 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 OR10AG1Q8NH19 301 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 PBOV1Q9GZY1 135 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 S1PR5Q9H228 398 aa11.74□□□□□ -0.53
USP40-208ENST00000450966 SLC25A1P53007 311 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 PYY3Q5JQD4 70 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 C1orf140Q5VVS0 124 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 H1FNTQ75WM6 255 aaPredicted RBP11.73□□□□□ -0.53
USP40-208ENST00000450966 WFDC5Q8TCV5 224 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 LPAR2Q9HBW0 351 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 TBC1D29Q9UFV1 150 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 PROCRQ9UNN8 238 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 DDX60LQ5H9U9 1706 aaKnown RBP11.73□□□□□ -0.53
USP40-208ENST00000450966 MYO18AQ92614 2054 aaKnown RBP11.73□□□□□ -0.53
USP40-208ENST00000450966 HIST1H2BKO60814 126 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 HIST1H2BJP06899 126 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 HIST1H2BOP23527 126 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 HIST1H2BBP33778 126 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 HIST1H2BDP58876 126 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 HIST1H2BCP62807 126 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 MEF2BQ02080 365 aaPredicted RBP11.73□□□□□ -0.53
USP40-208ENST00000450966 HIST2H2BEQ16778 126 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.73□□□□□ -0.53
USP40-208ENST00000450966 OR1N1Q8NGS0 311 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 HIST1H2BHQ93079 126 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 HIST1H2BNQ99877 126 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 HIST1H2BMQ99879 126 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 TMEM70Q9BUB7 260 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 CLN8Q9UBY8 286 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 VSIG4Q9Y279 399 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 EDIL3O43854 480 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 FUT3P21217 361 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 ATP5IP56385 69 aaPredicted RBP11.73□□□□□ -0.53
USP40-208ENST00000450966 FMODQ06828 376 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 WDR34Q96EX3 536 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 C4orf45Q96LM5 186 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 LOXHD1Q8IVV2 1947 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 S1PR2O95136 353 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 MELTFP08582 738 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 C12orf49Q9H741 205 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 MYO9BQ13459 2157 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 OR4C46A6NHA9 309 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 ACTL6AO96019 429 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 FTH1P19P0C7X4 201 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 TFPI2P48307 235 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 PCBP3P57721 371 aaKnown RBP11.73□□□□□ -0.53
USP40-208ENST00000450966 PNKDQ8N490 385 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 APCDD1LQ8NCL9 501 aa11.73□□□□□ -0.53
USP40-208ENST00000450966 IDSB3KWA1 339 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 CD1BP29016 333 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 CTGFP29279 349 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 ZNF770Q6IQ21 691 aaPredicted RBP11.72□□□□□ -0.53
USP40-208ENST00000450966 SDF2Q99470 211 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 TUBD1Q9UJT1 453 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 OR2W1Q9Y3N9 320 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 SUMO3P55854 103 aaPredicted RBP11.72□□□□□ -0.53
USP40-208ENST00000450966 ZXDAP98168 799 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 PRICKLE4Q2TBC4 344 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 SCCPDHQ8NBX0 429 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 OR2T6Q8NHC8 308 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 ARHGAP5-AS1Q96IT6 56 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 FAM234AQ9H0X4 552 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 SIPA1L3O60292 1781 aaPredicted RBP11.72□□□□□ -0.53
USP40-208ENST00000450966 URB1O60287 2271 aaKnown RBP11.72□□□□□ -0.53
USP40-208ENST00000450966 ZNF831Q5JPB2 1677 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 TMEM202A6NGA9 273 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 GFYI3L273 518 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 GREM1O60565 184 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 IL4P05112 153 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 NUBP1P53384 320 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 TMEM249Q2WGJ8 235 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 ZFAND6Q6FIF0 208 aa11.72□□□□□ -0.53
USP40-208ENST00000450966 OTOSQ8NHW6 89 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms