RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 EXTL2Q9UBQ6 330 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 KCNK7Q9Y2U2 307 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 ABCA1O95477 2261 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 CSMD1Q96PZ7 3565 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 TRGV10A0A0A0MS01 117 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 IGHV2-70DA0A0C4DH43 119 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 KIR2DS1A0A191URI9 304 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 A0A1W2PPH5 198 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 TPPPO94811 219 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 TGFAP01135 160 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 TNFSF8P32971 234 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 TAS2R20P59543 309 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 PAX2Q02962 417 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 HACD4Q5VWC8 232 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 TMEM200BQ69YZ2 307 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 CNIH2Q6PI25 160 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 BTNL3Q6UXE8 466 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 BAIAP2L2Q6UXY1 529 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 GLCCI1Q86VQ1 547 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 ZNF565Q8N9K5 539 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 DYRK2Q92630 601 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 CORO2AQ92828 525 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 CYYR1Q96J86 154 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 WDFY2Q96P53 400 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 CHMP1AQ9HD42 196 aaPredicted RBP13.03□□□□□ -0.32
USP40-206ENST00000443711 PTTG2Q9NZH5 202 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 RABL2AQ9UBK7 228 aaPredicted RBP13.03□□□□□ -0.32
USP40-206ENST00000443711 TRAPPC2LQ9UL33 140 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 RABL2BQ9UNT1 228 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 MRPS7Q9Y2R9 242 aaKnown RBP13.03□□□□□ -0.32
USP40-206ENST00000443711 LINC00312Q9Y6C7 94 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 OTOGQ6ZRI0 2925 aa13.03□□□□□ -0.32
USP40-206ENST00000443711 POM121CA8CG34 1229 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 NAPSAO96009 420 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 MELTFP08582 738 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 INHBBP09529 407 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 CD99P14209 185 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 FOSL1P15407 271 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 GATA3P23771 443 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 DVL1P1P54792 670 aaPredicted RBP13.02□□□□□ -0.33
USP40-206ENST00000443711 GNG2P59768 71 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 PITPNAQ00169 270 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 TRAPPC6BQ86SZ2 158 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 OR6Q1Q8NGQ2 317 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 OR4K15Q8NH41 348 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 C15orf40Q8WUR7 153 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 DACT3Q96B18 629 aaPredicted RBP13.02□□□□□ -0.33
USP40-206ENST00000443711 TMEM186Q96B77 213 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 TMUB1Q9BVT8 246 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 C12orf4Q9NQ89 552 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 MMP26Q9NRE1 261 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 HIF1ANQ9NWT6 349 aa13.02□□□□□ -0.33
USP40-206ENST00000443711 UBE2J1Q9Y385 318 aaPredicted RBP13.02□□□□□ -0.33
USP40-206ENST00000443711 ACANP16112 2415 aa13.01□□□□□ -0.33
USP40-206ENST00000443711 TRBV6-6A0A0A6YYG2 114 aa13.01□□□□□ -0.33
USP40-206ENST00000443711 TMEM235A6NFC5 223 aa13.01□□□□□ -0.33
USP40-206ENST00000443711 HLA-DQB1P01920 261 aa13.01□□□□□ -0.33
USP40-206ENST00000443711 GZMHP20718 246 aa13.01□□□□□ -0.33
USP40-206ENST00000443711 DCAF12L2Q5VW00 463 aa13.01□□□□□ -0.33
USP40-206ENST00000443711 TRAT1Q6PIZ9 186 aa13.01□□□□□ -0.33
USP40-206ENST00000443711 MRPL30Q8TCC3 161 aaKnown RBP13.01□□□□□ -0.33
USP40-206ENST00000443711 CCDC107Q8WV48 283 aa13.01□□□□□ -0.33
USP40-206ENST00000443711 HDHD3Q9BSH5 251 aaPredicted RBP13.01□□□□□ -0.33
USP40-206ENST00000443711 TAS2R3Q9NYW6 316 aa13.01□□□□□ -0.33
USP40-206ENST00000443711 ELF5Q9UKW6 265 aaPredicted RBP13.01□□□□□ -0.33
USP40-206ENST00000443711 INSIG2Q9Y5U4 225 aa13.01□□□□□ -0.33
USP40-206ENST00000443711 AKAP9Q99996 3911 aa13.01□□□□□ -0.33
USP40-206ENST00000443711 TRAV39A0A0B4J263 110 aa13□□□□□ -0.33
USP40-206ENST00000443711 A0A0G2JMP0 313 aa13□□□□□ -0.33
USP40-206ENST00000443711 A0A0X1KG70 313 aa13□□□□□ -0.33
USP40-206ENST00000443711 ZNF729A6NN14 1252 aaPredicted RBP13□□□□□ -0.33
USP40-206ENST00000443711 ZNF728P0DKX0 622 aa13□□□□□ -0.33
USP40-206ENST00000443711 PRSS3P35030 304 aa13□□□□□ -0.33
USP40-206ENST00000443711 GLP1RP43220 463 aa13□□□□□ -0.33
USP40-206ENST00000443711 ZNF273Q14593 569 aa13□□□□□ -0.33
USP40-206ENST00000443711 CR1LQ2VPA4 569 aa13□□□□□ -0.33
USP40-206ENST00000443711 C6orf183Q5T699 404 aa13□□□□□ -0.33
USP40-206ENST00000443711 MOB1BQ7L9L4 216 aa13□□□□□ -0.33
USP40-206ENST00000443711 KIR3DL3Q8N743 410 aa13□□□□□ -0.33
USP40-206ENST00000443711 OR4M2Q8NGB6 313 aa13□□□□□ -0.33
USP40-206ENST00000443711 OR13A1Q8NGR1 328 aa13□□□□□ -0.33
USP40-206ENST00000443711 SETD6Q8TBK2 473 aa13□□□□□ -0.33
USP40-206ENST00000443711 MRGPRDQ8TDS7 321 aa13□□□□□ -0.33
USP40-206ENST00000443711 ZNF714Q96N38 554 aa13□□□□□ -0.33
USP40-206ENST00000443711 GAL3ST2Q9H3Q3 398 aa13□□□□□ -0.33
USP40-206ENST00000443711 KCNIP1Q9NZI2 227 aa13□□□□□ -0.33
USP40-206ENST00000443711 ONECUT1Q9UBC0 465 aa13□□□□□ -0.33
USP40-206ENST00000443711 OPN4Q9UHM6 478 aa13□□□□□ -0.33
USP40-206ENST00000443711 MGAT4AQ9UM21 535 aa13□□□□□ -0.33
USP40-206ENST00000443711 hCG_1809904A0A1W2PP81 198 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 A0A1W2PPE2 198 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 A0A1W2PR64 198 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 A0A1W2PRV1 198 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 MEX3AA1L020 520 aaKnown RBP12.99□□□□□ -0.33
USP40-206ENST00000443711 FABP12A6NFH5 140 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 M0R1W7 72 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 CD5LO43866 347 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 ORC5O43913 435 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 CGB3P0DN86 165 aa12.99□□□□□ -0.33
USP40-206ENST00000443711 CGB7P0DN87 165 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms