RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 TPRX1Q8N7U7 411 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 SETD9Q8NE22 299 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 WFDC9Q8NEX5 89 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 OR51A2Q8NGJ7 313 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 OR51T1Q8NGJ9 327 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 OR52M1Q8NGK5 317 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 CNIH3Q8TBE1 160 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 CHPT1Q8WUD6 406 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 TOMM40LQ969M1 308 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 RFT1Q96AA3 541 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 MRPS24Q96EL2 167 aaKnown RBP6.23□□□□□ -1.41
CD44-211ENST00000442151 RCC1LQ96I51 464 aaKnown RBP6.23□□□□□ -1.41
CD44-211ENST00000442151 NR1H4Q96RI1 486 aaPredicted RBP6.23□□□□□ -1.41
CD44-211ENST00000442151 FGF20Q9NP95 211 aaPredicted RBP6.23□□□□□ -1.41
CD44-211ENST00000442151 TMEM138Q9NPI0 162 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 ERVK13-1Q9NX77 482 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 ING4Q9UNL4 249 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 MOB4Q9Y3A3 225 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 HSPE1-MOB4S4R3N1 261 aa6.23□□□□□ -1.41
CD44-211ENST00000442151 J3QR06 171 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 CCRL2O00421 344 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 PIN1P1O15428 100 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 HTR3BO95264 441 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 CALCBP10092 127 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 TAS2R43P59537 309 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 UNQ9370/PRO34162Q6UXP9 181 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 ASCL4Q6XD76 172 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 C1QL4Q86Z23 238 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 FOXRED2Q8IWF2 684 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 OSR2Q8N2R0 312 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 Q8NFD4 153 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 OR10X1Q8NGY0 326 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 MRAPQ8TCY5 172 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 FAM192AQ9GZU8 254 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 IFT22Q9H7X7 185 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 LINC00574Q9H8X3 128 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 IL36GQ9NZH8 169 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 ZNF281Q9Y2X9 895 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 TGP01266 2768 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 TRRAPQ9Y4A5 3859 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 MEGF8Q7Z7M0 2845 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 hCG_2014768A0A024R1R8 64 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 IGKV1-12A0A0C4DH73 117 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 TMEM30CPA0ZSE6 113 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 E9PQ18 207 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 G3V4G9 280 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 FGF16O43320 207 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 TXNL1O43396 289 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 ZFPL1O95159 310 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 IL1AP01583 271 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 IGKV1D-12P01611 117 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 GTF2F2P13984 249 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 TMEM11P17152 192 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 BDKRB2P30411 391 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 ZNF93P35789 620 aaPredicted RBP6.22□□□□□ -1.41
CD44-211ENST00000442151 GLP1RP43220 463 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 OR3A4PP47883 348 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 ZP1P60852 638 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 HES1Q14469 280 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 ABCA11PQ4W5N1 156 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 NHLRC3Q5JS37 347 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 C9orf152Q5JTZ5 239 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 TCF23Q7RTU1 214 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 PQLC1Q8N2U9 271 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 C8orf31Q8N9H6 132 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 OR8H1Q8NGG4 311 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 OR52I1Q8NGK6 324 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 OR5D18Q8NGL1 313 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 OR52N1Q8NH53 320 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 OR5M11Q96RB7 305 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 S100A14Q9HCY8 104 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 BABAM2Q9NXR7 383 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 CALYQ9NYX4 217 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 LRRC42Q9Y546 428 aa6.22□□□□□ -1.41
CD44-211ENST00000442151 PSMB11A5LHX3 300 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 MCRIP1C9JLW8 97 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 LY6LH3BQJ8 138 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 ORC5O43913 435 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 CA11O75493 328 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 GPX5O75715 221 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 BAG2O95816 211 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 GLAP06280 429 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 GABRB1P18505 474 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 PAX6P26367 422 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 ATXN7L3Q14CW9 347 aaPredicted RBP6.21□□□□□ -1.42
CD44-211ENST00000442151 C17orf58Q2M2W7 97 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 C6orf183Q5T699 404 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 NEK7Q8TDX7 302 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 WIPF2Q8TF74 440 aaPredicted RBP6.21□□□□□ -1.42
CD44-211ENST00000442151 KIRREL1Q96J84 757 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 SPACA5Q96QH8 159 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 CHCHD6Q9BRQ6 235 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 DPCDQ9BVM2 203 aaPredicted RBP6.21□□□□□ -1.42
CD44-211ENST00000442151 ZNF286AQ9HBT8 521 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 ING3Q9NXR8 418 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 SMPD3Q9NY59 655 aaPredicted RBP6.21□□□□□ -1.42
CD44-211ENST00000442151 IL36RNQ9UBH0 155 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 ST3GAL6Q9Y274 331 aa6.21□□□□□ -1.42
CD44-211ENST00000442151 MEX3AA1L020 520 aaKnown RBP6.2□□□□□ -1.42
CD44-211ENST00000442151 FAM90A18PA6NE21 464 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms