RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 DANCRP0C864 163 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 MORN3Q6PF18 240 aaPredicted RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 SLC16A13Q7RTY0 426 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 LSM10Q969L4 123 aaKnown RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 NPVFQ9HCQ7 196 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 LTBP4Q8N2S1 1624 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 RD3LP0DJH9 198 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 SRSF5Q13243 272 aaKnown RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 R3HDM4Q96D70 268 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 SNRNP40Q96DI7 357 aaKnown RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 GALNT14Q96FL9 552 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 GPR35Q9HC97 309 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 TBL2Q9Y4P3 447 aaKnown RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 DSCR4P56555 118 aaPredicted RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 FAM26DQ5JW98 314 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 RASL11AQ6T310 242 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 NECAP1Q8NC96 275 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 MRPL13Q9BYD1 178 aaKnown RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 MRPL37Q9BZE1 423 aaKnown RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 JKAMPQ9P055 326 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 DHHO43323 396 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 RAC3P60763 192 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 CLEC18BQ6UXF7 455 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 SLC25A2Q9BXI2 301 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 SLC25A5P05141 298 aaKnown RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 IQCF3P0C7M6 154 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 GLRA1P23415 457 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 CTSCP53634 463 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 RPEQ96AT9 228 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 FLRT3Q9NZU0 649 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 MCM3APO60318 1980 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 M0R3E3 92 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 S1PR2O95136 353 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 POLR2GP62487 172 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS53-204ENST00000437048 SLC25A26Q70HW3 274 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 OR10V1Q8NGI7 309 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 OR51E1Q8TCB6 317 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 IL4P05112 153 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 CTSSP25774 331 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 CCSMST1Q4G0I0 132 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 SAXO1Q8IYX7 474 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 COL16A1Q07092 1604 aaPredicted RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 A0A0A6YYD5 115 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 ZXDBP98169 803 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 Q6ZPB1 254 aaPredicted RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 DEFB132Q7Z7B7 95 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 C5orf30Q96GV9 206 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 CDX4O14627 284 aaPredicted RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 TCF21O43680 179 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 AMY1AP04745 511 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 NGFRP08138 427 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 ZNF121P58317 390 aaPredicted RBP6.38□□□□□ -1.39
VPS53-204ENST00000437048 OR9G4Q8NGQ1 327 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 UBTD1Q9HAC8 227 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 TCFL5Q9UL49 500 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 RPH3ALQ9UNE2 315 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 ARFGEF1Q9Y6D6 1849 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 NDUFS6O75380 124 aaKnown RBP6.37□□□□□ -1.39
VPS53-204ENST00000437048 TRGC1P0CF51 173 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 ACAA2P42765 397 aaKnown RBP6.37□□□□□ -1.39
VPS53-204ENST00000437048 FGF13Q92913 245 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 CHST5Q9GZS9 411 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 IL36GQ9NZH8 169 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 MYOFQ9NZM1 2061 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 PRSS45Q7RTY3 260 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 PLPPR1Q8TBJ4 325 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 SPACA9Q96E40 222 aaPredicted RBP6.37□□□□□ -1.39
VPS53-204ENST00000437048 ST20Q9HBF5 79 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 YBX2Q9Y2T7 364 aaKnown RBP6.37□□□□□ -1.39
VPS53-204ENST00000437048 OR51B4Q9Y5P0 310 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 ANK1P16157 1881 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 OR2J2O76002 312 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 TMIGD3P0DMS9 266 aaPredicted RBP6.37□□□□□ -1.39
VPS53-204ENST00000437048 ISG15P05161 165 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 PDFQ9HBH1 243 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 LRP12Q9Y561 859 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 COL11A1P12107 1806 aaPredicted RBP6.37□□□□□ -1.39
VPS53-204ENST00000437048 SNURFLB1AK76 121 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 WNT1P04628 370 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 OTX2P32243 289 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 SCNM1Q9BWG6 230 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 PRDM7Q9NQW5 492 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 HPXP02790 462 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 PLSCR3Q9NRY6 295 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 ADAMTSL3P82987 1691 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 A0A1W2PQM1 296 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 GPX4P36969 197 aaPredicted RBP6.37□□□□□ -1.39
VPS53-204ENST00000437048 C5orf17Q8NAS9 161 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 FUT9Q9Y231 359 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 PAM16Q9Y3D7 125 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 CD74P04233 296 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 SPATA45Q537H7 98 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 C9orf152Q5JTZ5 239 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 NKAIN4Q8IVV8 208 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 BCORP1Q8N888 145 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 SYT8Q8NBV8 401 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 FAM131CQ96AQ9 280 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 MS4A7Q9GZW8 240 aaPredicted RBP6.37□□□□□ -1.39
VPS53-204ENST00000437048 ZC3H12DA2A288 527 aaKnown RBP6.37□□□□□ -1.39
VPS53-204ENST00000437048 PPYP01298 95 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 112.9 ms