RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CANT1Q8WVQ1 401 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 TSEN15Q8WW01 171 aaKnown RBP3.2□□□□□ -1.9
HMGB3-203ENST00000430118 FAF2Q96CS3 445 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 RCN3Q96D15 328 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 CMBLQ96DG6 245 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 SMIM12Q96EX1 92 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 CELF6Q96J87 481 aaKnown RBP3.2□□□□□ -1.9
HMGB3-203ENST00000430118 SMIM8Q96KF7 97 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 FCRL1Q96LA6 429 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 TSNAXQ99598 290 aaKnown RBP3.2□□□□□ -1.9
HMGB3-203ENST00000430118 RBBP8Q99708 897 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 SMR3AQ99954 134 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 ZNF670Q9BS34 389 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 RIOK2Q9BVS4 552 aaKnown RBP3.2□□□□□ -1.9
HMGB3-203ENST00000430118 BEX2Q9BXY8 128 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 CHST5Q9GZS9 411 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 MED28Q9H204 178 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 OR2AG1Q9H205 316 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 SLC38A1Q9H2H9 487 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 GLIPR2Q9H4G4 154 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 PDFQ9HBH1 243 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 TMEM138Q9NPI0 162 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 VNN3Q9NY84 501 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 IL17CQ9P0M4 197 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 PAK5Q9P286 719 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 DHCR7Q9UBM7 475 aaKnown RBP3.2□□□□□ -1.9
HMGB3-203ENST00000430118 SMPXQ9UHP9 88 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 NAGKQ9UJ70 344 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 C3orf18Q9UK00 162 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 IKZF2Q9UKS7 526 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 SLC35A3Q9Y2D2 325 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 PCYT1BQ9Y5K3 369 aaPredicted RBP3.2□□□□□ -1.9
HMGB3-203ENST00000430118 CUBNO60494 3623 aa3.2□□□□□ -1.9
HMGB3-203ENST00000430118 PKDREJQ9NTG1 2253 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 NSD1Q96L73 2696 aaPredicted RBP3.19□□□□□ -1.9
HMGB3-203ENST00000430118 TMEM72A0PK05 275 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 NDUFAF8A1L188 74 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 IFITM10A6NMD0 228 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 HMSDA8MTL9 139 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 A8MWP6 167 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 SEC14L6B5MCN3 397 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 INMT-MINDY4F8WBC2 141 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 M0R143 59 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 DFFAO00273 331 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 MRASO14807 208 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 PLA2G10O15496 165 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 LYRM1O43325 122 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 CXCL13O43927 109 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 SCN2BO60939 215 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 RP2O75695 350 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 FADS2O95864 444 aaKnown RBP3.19□□□□□ -1.9
HMGB3-203ENST00000430118 LY6G6DO95868 133 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 CFDP00746 253 aaPredicted RBP3.19□□□□□ -1.9
HMGB3-203ENST00000430118 IFNA21P01568 189 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 C8GP07360 202 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 TSPAN19P0C672 248 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 SLC35E2BP0CK96 405 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 SLC35E2P0CK97 266 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 SULT1A3P0DMM9 295 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 SULT1A4P0DMN0 295 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 GABRA1P14867 456 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 UGT2B7P16662 529 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 ZNF25P17030 456 aaPredicted RBP3.19□□□□□ -1.9
HMGB3-203ENST00000430118 ZNF7P17097 686 aaPredicted RBP3.19□□□□□ -1.9
HMGB3-203ENST00000430118 COX5AP20674 150 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 FGF7P21781 194 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 CCNOP22674 350 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 PSMB9P28065 219 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 GGT2P36268 569 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 GPR4P46093 362 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 EVX1P49640 407 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 CCR6P51684 374 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 STC1P52823 247 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 CRIP2P52943 208 aaPredicted RBP3.19□□□□□ -1.9
HMGB3-203ENST00000430118 ATP1B3P54709 279 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 CLDN8P56748 225 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 KLF3P57682 345 aaPredicted RBP3.19□□□□□ -1.9
HMGB3-203ENST00000430118 KRTAP10-11P60412 298 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 ERVK11-1P61568 191 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 DEFA5Q01523 94 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 CD47Q08722 323 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 PEA15Q15121 130 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 TP53I3Q53FA7 332 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 TFDP3Q5H9I0 405 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 HENMT1Q5T8I9 393 aaKnown RBP3.19□□□□□ -1.9
HMGB3-203ENST00000430118 RAET1LQ5VY80 246 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 LEMD1Q68G75 181 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 GLYATQ6IB77 296 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 OR2A2Q6IF42 318 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 LAIR2Q6ISS4 152 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 SCIMPQ6UWF3 145 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 TMIGD1Q6UXZ0 262 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 TCF24Q7RTU0 167 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 LRRC28Q86X40 367 aaPredicted RBP3.19□□□□□ -1.9
HMGB3-203ENST00000430118 FUNDC1Q8IVP5 155 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 ACBD7Q8N6N7 88 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 KIR3DL3Q8N743 410 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 CSNK1A1LQ8N752 337 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 OR5T3Q8NGG3 340 aa3.19□□□□□ -1.9
HMGB3-203ENST00000430118 OR5D18Q8NGL1 313 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms