RNA–Protein interactions for RNA: ENST00000422392.6

CDH1-202, Transcript of cadherin 1, humanhuman

TSL 1 (best) BASIC

Gene CDH1, Length 2,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-202ENST00000422392 IFT22Q9H7X7 185 aa13.53□□□□□ -0.24
CDH1-202ENST00000422392 LYRM2Q9NU23 88 aaPredicted RBP13.53□□□□□ -0.24
CDH1-202ENST00000422392 CHD3Q12873 2000 aaKnown RBP13.53□□□□□ -0.24
CDH1-202ENST00000422392 GTF3C1Q12789 2109 aa13.53□□□□□ -0.24
CDH1-202ENST00000422392 TNRC6AQ8NDV7 1962 aaKnown RBP13.52□□□□□ -0.24
CDH1-202ENST00000422392 NCOR1O75376 2440 aa13.52□□□□□ -0.24
CDH1-202ENST00000422392 HS3ST1O14792 307 aa13.52□□□□□ -0.24
CDH1-202ENST00000422392 VAMP2P63027 116 aa13.52□□□□□ -0.24
CDH1-202ENST00000422392 TRA2AQ13595 282 aaKnown RBP eCLIP13.52□□□□□ -0.24
CDH1-202ENST00000422392 SPSB3Q6PJ21 355 aa13.52□□□□□ -0.24
CDH1-202ENST00000422392 MRPL21Q7Z2W9 205 aaKnown RBP13.52□□□□□ -0.24
CDH1-202ENST00000422392 TMEM105Q8N8V8 129 aa13.52□□□□□ -0.24
CDH1-202ENST00000422392 CT55Q8WUE5 264 aa13.52□□□□□ -0.24
CDH1-202ENST00000422392 SIGLEC12Q96PQ1 595 aa13.52□□□□□ -0.24
CDH1-202ENST00000422392 FAM86C1Q9NVL1 165 aa13.52□□□□□ -0.24
CDH1-202ENST00000422392 LRFN1Q9P244 771 aa13.52□□□□□ -0.24
CDH1-202ENST00000422392 CFAP47Q6ZTR5 3102 aa13.52□□□□□ -0.24
CDH1-202ENST00000422392 FGF12P61328 243 aa13.52□□□□□ -0.25
CDH1-202ENST00000422392 ZNF266Q14584 549 aa13.52□□□□□ -0.25
CDH1-202ENST00000422392 RNF212Q495C1 297 aa13.52□□□□□ -0.25
CDH1-202ENST00000422392 SOHLH1Q5JUK2 328 aa13.52□□□□□ -0.25
CDH1-202ENST00000422392 C17orf78Q8N4C9 275 aa13.52□□□□□ -0.25
CDH1-202ENST00000422392 ZNF561Q8N587 486 aa13.52□□□□□ -0.25
CDH1-202ENST00000422392 OR1J1Q8NGS3 322 aa13.52□□□□□ -0.25
CDH1-202ENST00000422392 PSMF1Q92530 271 aa13.52□□□□□ -0.25
CDH1-202ENST00000422392 RDH5Q92781 318 aa13.52□□□□□ -0.25
CDH1-202ENST00000422392 PLEKHF2Q9H8W4 249 aa13.52□□□□□ -0.25
CDH1-202ENST00000422392 LIPGQ9Y5X9 500 aa13.52□□□□□ -0.25
CDH1-202ENST00000422392 A0A0G2JRQ6 117 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 CHST1O43916 411 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 PITX3O75364 302 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 ZNF806P0C7X5 589 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 NMSQ5H8A3 153 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 WDR5BQ86VZ2 330 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 ZDHHC23Q8IYP9 409 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 SUMF2Q8NBJ7 301 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 TECTBQ96PL2 329 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 TRAV39A0A0B4J263 110 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 FAM166BA8MTA8 275 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 ZNF727A8MUV8 499 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 UBE2CO00762 179 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 NQO2P16083 231 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 B2MP61769 119 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 FAM185AQ8N0U4 392 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 OR51H1Q8NH63 302 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 PLPPR1Q8TBJ4 325 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 THOC3Q96J01 351 aaKnown RBP13.51□□□□□ -0.25
CDH1-202ENST00000422392 TAAR9Q96RI9 348 aa13.51□□□□□ -0.25
CDH1-202ENST00000422392 RBFOX3A6NFN3 312 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 PRSS44E7EML9 344 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 TRAPPC2LH3BP13 241 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 RND3P61587 244 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 RPS23P62266 143 aaKnown RBP13.5□□□□□ -0.25
CDH1-202ENST00000422392 SRPXP78539 464 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 C3AR1Q16581 482 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 CEACAM21Q3KPI0 293 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 DCAF12Q5T6F0 453 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 Q8NFD4 153 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 CACNA1DQ01668 2161 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 GPR179Q6PRD1 2367 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 DUSP3P51452 185 aaPredicted RBP13.5□□□□□ -0.25
CDH1-202ENST00000422392 ZXDAP98168 799 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 P4HA3Q7Z4N8 544 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 TUBA4BQ9H853 241 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 TAAR3PQ9P1P4 343 aa13.5□□□□□ -0.25
CDH1-202ENST00000422392 ARGFXA6NJG6 315 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 RHEBQ15382 184 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 VASH2Q86V25 355 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 IL22RA1Q8N6P7 574 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 UBALD1Q8TB05 177 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 SPIN2AQ99865 258 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 SPIN2BQ9BPZ2 258 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 DOCK11Q5JSL3 2073 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 H0YL77 283 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 TUSC2O75896 110 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 VDAC1P21796 283 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 UCP1P25874 307 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 PMELP40967 661 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 LHX2P50458 406 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 RAB1AP62820 205 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 ID3Q02535 119 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 TCEAL6Q6IPX3 200 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 LFNGQ8NES3 379 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 IL1F10Q8WWZ1 152 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 TCEAL3Q969E4 200 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 SLC25A31Q9H0C2 315 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 ATPIF1Q9UII2 106 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 MMP24Q9Y5R2 645 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 ATP23Q9Y6H3 246 aa13.49□□□□□ -0.25
CDH1-202ENST00000422392 WRBO00258 174 aa13.48□□□□□ -0.25
CDH1-202ENST00000422392 YKT6O15498 198 aa13.48□□□□□ -0.25
CDH1-202ENST00000422392 PGLYRP1O75594 196 aaPredicted RBP13.48□□□□□ -0.25
CDH1-202ENST00000422392 OR2C1O95371 312 aa13.48□□□□□ -0.25
CDH1-202ENST00000422392 OR8U8P0C7N1 319 aa13.48□□□□□ -0.25
CDH1-202ENST00000422392 MAGEA5P43359 124 aa13.48□□□□□ -0.25
CDH1-202ENST00000422392 PAX9P55771 341 aa13.48□□□□□ -0.25
CDH1-202ENST00000422392 PCSK4Q6UW60 755 aa13.48□□□□□ -0.25
CDH1-202ENST00000422392 MYPOPQ86VE0 399 aaPredicted RBP13.48□□□□□ -0.25
CDH1-202ENST00000422392 PRR18Q8N4B5 295 aa13.48□□□□□ -0.25
CDH1-202ENST00000422392 MRPL30Q8TCC3 161 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms