RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ZNF561Q8N587 486 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 GCSAMQ8N6F7 178 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 OR11H7Q8NGC8 314 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 MAFIPQ8WZ33 124 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 IL22RA2Q969J5 263 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 OR2V2Q96R30 315 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 RAB1BQ9H0U4 201 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 TLNRD1Q9H1K6 362 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 NCOR1P1Q9H4R4 102 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 OR5H14A6NHG9 310 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 MED6O75586 246 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 TOXO94900 526 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 RPA2P15927 270 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 S100A11P31949 105 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 SERPINF1P36955 418 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 TLE1Q04724 770 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 SEM1Q6ZVN7 128 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 LHFPL1Q86WI0 220 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 ABHD14BQ96IU4 210 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 PLEKHA2Q9HB19 425 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 MSL2Q9HCI7 577 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 GNG12Q9UBI6 72 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 hADV38S2A0JD32 116 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 GOSR1O95249 250 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 SLC25A4P12235 298 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 KIR2DS2P43631 304 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 AADACL3Q5VUY0 350 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 TMEM65Q6PI78 240 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 ACOT7LQ6ZUV0 252 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 MOGAT3Q86VF5 341 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 PRELID3BQ9Y3B1 194 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 PCSK5Q92824 1860 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 KIAA1549Q9HCM3 1950 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 FAM221AA4D161 298 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 OR4A8P0C604 315 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 IL3RAP26951 378 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 GATA4P43694 442 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 OPCMLQ14982 345 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 IAH1Q2TAA2 248 aaPredicted RBP7.13□□□□□ -1.27
USP54-203ENST00000418501 LRRC10Q5BKY1 277 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 CLEC18BQ6UXF7 455 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 Q8NA96 180 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 GAL3ST2Q9H3Q3 398 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 SAP30LQ9HAJ7 183 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 PFDN2Q9UHV9 154 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 FZR1Q9UM11 496 aa7.13□□□□□ -1.27
USP54-203ENST00000418501 MUC6Q6W4X9 2439 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 IGLV3-9A0A075B6K5 115 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 TRIM77I1YAP6 450 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 ARPC5O15511 151 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 NAPSAO96009 420 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 HFEQ30201 348 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 FBXL19-AS1Q494R0 122 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 PRAMEF6Q5VXH4 476 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 OR52B4Q8NGK2 314 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 DCUN1D4Q92564 292 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 GALNT14Q96FL9 552 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 DMRTA2Q96SC8 542 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 MED13Q9UHV7 2174 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 A0A0B4J293 547 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 CRYM-AS1A6NIL9 109 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 NPIPB11E5RHQ5 1161 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 LGALS8O00214 317 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 AADACP22760 399 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 ERVS71-1P61550 626 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 ERVK-16P61578 105 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 C11orf87Q6NUJ2 197 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 LIAT1Q6ZQX7 453 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 C3orf85A0A1B0GTC6 90 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 K7EM74 188 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 MPPED1O15442 326 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 NDUFB3O43676 98 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 HOXB5P09067 269 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 AKR1C2P52895 323 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 ERVK11-1P61568 191 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 RPP30P78346 268 aaKnown RBP7.12□□□□□ -1.27
USP54-203ENST00000418501 NKX6-1P78426 367 aaPredicted RBP7.12□□□□□ -1.27
USP54-203ENST00000418501 WDR82Q6UXN9 313 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 ADTRPQ96IZ2 230 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 RSRP1Q9BUV0 290 aa7.12□□□□□ -1.27
USP54-203ENST00000418501 DNAJC13O75165 2243 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 PHF3Q92576 2039 aaKnown RBP7.11□□□□□ -1.27
USP54-203ENST00000418501 ZSCAN5BA6NJL1 495 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 SHOXO15266 292 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 ST8SIA3O43173 380 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 CDS2O95674 445 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 TPT1P13693 172 aaKnown RBP7.11□□□□□ -1.27
USP54-203ENST00000418501 LMO1P25800 156 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 PHLDA2Q53GA4 152 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 GALNT11Q8NCW6 608 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 ITLN1Q8WWA0 313 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 CABLES2Q9BTV7 478 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 SLC2A9Q9NRM0 540 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 JKAMPQ9P055 326 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 MED12Q93074 2177 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 SRRM5B3KS81 715 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 SLC33A1O00400 549 aaPredicted RBP7.11□□□□□ -1.27
USP54-203ENST00000418501 EDDM3BP56851 147 aa7.11□□□□□ -1.27
USP54-203ENST00000418501 RPL23AP62750 156 aaKnown RBP7.11□□□□□ -1.27
USP54-203ENST00000418501 COL10A1Q03692 680 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms