RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 FDX2Q6P4F2 183 aa9.7□□□□□ -0.86
PTPRF-204ENST00000412568 BTNL3Q6UXE8 466 aa9.7□□□□□ -0.86
PTPRF-204ENST00000412568 TMEM108Q6UXF1 575 aa9.7□□□□□ -0.86
PTPRF-204ENST00000412568 C1orf87Q8N0U7 546 aa9.7□□□□□ -0.86
PTPRF-204ENST00000412568 MITD1Q8WV92 249 aa9.7□□□□□ -0.86
PTPRF-204ENST00000412568 OPA3Q9H6K4 179 aa9.7□□□□□ -0.86
PTPRF-204ENST00000412568 GAR1Q9NY12 217 aaKnown RBP9.7□□□□□ -0.86
PTPRF-204ENST00000412568 RCL1Q9Y2P8 373 aaKnown RBP9.7□□□□□ -0.86
PTPRF-204ENST00000412568 MPC1Q9Y5U8 109 aa9.7□□□□□ -0.86
PTPRF-204ENST00000412568 TMEM30CPA0ZSE6 113 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 OR5B21A6NL26 309 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 ADAM20O43506 726 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 PJVKQ0ZLH3 352 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 ENDOGQ14249 297 aaKnown RBP9.69□□□□□ -0.86
PTPRF-204ENST00000412568 ZNF528Q3MIS6 628 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 BAGE3Q86Y29 109 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 BAGE2Q86Y30 109 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 OR10X1Q8NGY0 326 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 PRR7Q8TB68 274 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 ZNF524Q96C55 264 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 ZNF552Q9H707 407 aaPredicted RBP9.69□□□□□ -0.86
PTPRF-204ENST00000412568 CCL28Q9NRJ3 127 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 SFTA3P0C7M3 94 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 CEBPDP49716 269 aaPredicted RBP9.69□□□□□ -0.86
PTPRF-204ENST00000412568 FOXG1P55316 489 aaPredicted RBP9.69□□□□□ -0.86
PTPRF-204ENST00000412568 Q3ZCU0 254 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 THNSL2Q86YJ6 484 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 BVESQ8NE79 360 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 TOLLIPQ9H0E2 274 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 ALX4Q9H161 411 aaPredicted RBP9.69□□□□□ -0.86
PTPRF-204ENST00000412568 A0A0U1RQV5 110 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 A0A1W2PRD5 423 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 A0A1W2PRF3 423 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 A0A1W2PRM7 423 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 ZNF883P0CG24 379 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 CD82P27701 267 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 MEOX2P50222 304 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 POLR2GP62487 172 aaKnown RBP eCLIP9.69□□□□□ -0.86
PTPRF-204ENST00000412568 AESQ08117 197 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 RPL7L1Q6DKI1 246 aaKnown RBP9.69□□□□□ -0.86
PTPRF-204ENST00000412568 HSD17B13Q7Z5P4 300 aaPredicted RBP9.69□□□□□ -0.86
PTPRF-204ENST00000412568 ZNF439Q8NDP4 499 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 PTX4Q96A99 478 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 CABLES2Q9BTV7 478 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 ZNF319Q9P2F9 582 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 OTOGLQ3ZCN5 2332 aa9.69□□□□□ -0.86
PTPRF-204ENST00000412568 ZNF727A8MUV8 499 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 HMGB3O15347 200 aaKnown RBP9.68□□□□□ -0.86
PTPRF-204ENST00000412568 CYB5BO43169 146 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 LYG1Q8N1E2 194 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 OR10D4PQ8NGN7 298 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 LOC102723996A0A087X1L8 192 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 FAM24AA6NFZ4 105 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 MT-CO2P00403 227 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 FAHD2BQ6P2I3 314 aaPredicted RBP9.68□□□□□ -0.86
PTPRF-204ENST00000412568 PRSS54Q6PEW0 395 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 PINX1Q96BK5 328 aaKnown RBP9.68□□□□□ -0.86
PTPRF-204ENST00000412568 FAHD2AQ96GK7 314 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 OR2D2Q9H210 308 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 ARV1Q9H2C2 271 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 HIPK2Q9H2X6 1198 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 RPH3ALQ9UNE2 315 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 ZGRF1Q86YA3 2104 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 ZNF98A6NK75 572 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 TMPRSS2O15393 492 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 FCGR3BO75015 233 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 ZBTB25P24278 435 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 ACKR3P25106 362 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 FOXO1Q12778 655 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 LYZL2Q7Z4W2 148 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 GAPTQ8N292 157 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 SLC35G3Q8N808 338 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 MRPL24Q96A35 216 aaKnown RBP9.68□□□□□ -0.86
PTPRF-204ENST00000412568 ISOC2Q96AB3 205 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 RPUSD4Q96CM3 377 aaKnown RBP9.68□□□□□ -0.86
PTPRF-204ENST00000412568 TXN2Q99757 166 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 ZNF355PQ9NSJ1 428 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 IGF2RP11717 2491 aa9.68□□□□□ -0.86
PTPRF-204ENST00000412568 C3orf85A0A1B0GTC6 90 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 GFRA3O60609 400 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 PPYP01298 95 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 BTCP35070 178 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 GNB1P62873 340 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 FADS6Q8N9I5 356 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 RSRP1Q9BUV0 290 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 MED9Q9NWA0 146 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 ZNF107Q9UII5 783 aaPredicted RBP9.67□□□□□ -0.86
PTPRF-204ENST00000412568 A0A1W2PPE3 182 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 HSBP1L1C9JCN9 74 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 DAOP14920 347 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 UCP2P55851 309 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 LGALS4P56470 323 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 ERVS71-1P61550 626 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 VWA1Q6PCB0 445 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 BOD1Q96IK1 185 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 NAA60Q9H7X0 242 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 NPDC1Q9NQX5 325 aaPredicted RBP9.67□□□□□ -0.86
PTPRF-204ENST00000412568 SLC2A9Q9NRM0 540 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 OSGIN2Q9Y236 505 aa9.67□□□□□ -0.86
PTPRF-204ENST00000412568 KITLGP21583 273 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms