RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 FAM90A18PA6NE21 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A16PA6NEW6 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 OR5H14A6NHG9 310 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A20PA6NIJ5 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A8PA6NJQ4 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A7PA6NKC0 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A22PA8MWA6 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A12PA8MX19 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A5PA8MXJ8 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A23PA8MXZ1 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 TPD52L2O43399 206 aaKnown RBP11.31□□□□□ -0.6
LIMS1-204ENST00000409441 SFT2D2O95562 160 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A15PP0C7V4 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A13PP0C7W8 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A14PP0C7W9 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM90A24PP0C7X0 464 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 TNFSF4P23510 183 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 CCL8P80075 99 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 TNFAIP6P98066 277 aaPredicted RBP11.31□□□□□ -0.6
LIMS1-204ENST00000409441 NKAPLQ5M9Q1 402 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 AADACL3Q5VUY0 350 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 SPERTQ8NA61 448 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 DECR2Q9NUI1 292 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 ZNF701Q9NV72 531 aaPredicted RBP11.31□□□□□ -0.6
LIMS1-204ENST00000409441 DSCAMO60469 2012 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 IGKV1-12A0A0C4DH73 117 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 A0A0D9SG52 128 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.31□□□□□ -0.6
LIMS1-204ENST00000409441 RPS10-NUDT3A0A1W2PQS6 291 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 PQLC2LA1A4F0 135 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 B3GALNT1O75752 331 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 PLATP00750 562 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 IGKV1D-12P01611 117 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 NPY4RP50391 375 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 ARPC4P59998 168 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 CYCSP99999 105 aaKnown RBP11.31□□□□□ -0.6
LIMS1-204ENST00000409441 ZNF345Q14585 488 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 TAF9Q16594 264 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 SPRNQ5BIV9 151 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 FAM209AQ5JX71 171 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 OR5A2Q8NGI9 324 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 OR51F2Q8NH61 342 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 COQ8AQ8NI60 647 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 TMEM230Q96A57 120 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 LURAP1Q96LR2 239 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 MICU1Q9BPX6 476 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 CMSS1Q9BQ75 279 aaKnown RBP11.31□□□□□ -0.6
LIMS1-204ENST00000409441 EGLN1Q9GZT9 426 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 MFFQ9GZY8 342 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 ARL6Q9H0F7 186 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 CXXC4Q9H2H0 198 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 IL19Q9UHD0 177 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 ZNF230Q9UIE0 474 aaPredicted RBP11.31□□□□□ -0.6
LIMS1-204ENST00000409441 AK3Q9UIJ7 227 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 ANXA10Q9UJ72 324 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 ST3GAL6Q9Y274 331 aa11.31□□□□□ -0.6
LIMS1-204ENST00000409441 APCP25054 2843 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 IGHV3-64DA0A0J9YX35 117 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 PDCD6O75340 191 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 OR2F2O95006 317 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 CFDP00746 253 aaPredicted RBP11.3□□□□□ -0.6
LIMS1-204ENST00000409441 CD55P08174 381 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 RBM11P57052 281 aaKnown RBP11.3□□□□□ -0.6
LIMS1-204ENST00000409441 MZT1Q08AG7 82 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 OR2F1Q13607 317 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 ELP2Q6IA86 826 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 C11orf87Q6NUJ2 197 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 GSG1LQ6UXU4 331 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 ZNF546Q86UE3 836 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 CASTOR1Q8WTX7 329 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 HPSE2Q8WWQ2 592 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 OR2V2Q96R30 315 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 RTBDNQ9BSG5 229 aaPredicted RBP11.3□□□□□ -0.6
LIMS1-204ENST00000409441 FAAP24Q9BTP7 215 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 RTL8AQ9BWD3 113 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 GSX2Q9BZM3 304 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 NMES1Q9C002 83 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 FGF23Q9GZV9 251 aaPredicted RBP11.3□□□□□ -0.6
LIMS1-204ENST00000409441 RAB18Q9NP72 206 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 KIF25Q9UIL4 384 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 C14orf166Q9Y224 244 aaKnown RBP11.3□□□□□ -0.6
LIMS1-204ENST00000409441 ARFGEF3Q5TH69 2177 aa11.3□□□□□ -0.6
LIMS1-204ENST00000409441 ZNF732B4DXR9 585 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 SDCBPO00560 298 aaPredicted RBP11.29□□□□□ -0.6
LIMS1-204ENST00000409441 NDUFS7O75251 213 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 F12P00748 615 aaPredicted RBP11.29□□□□□ -0.6
LIMS1-204ENST00000409441 GRPP07492 148 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 FCGR3AP08637 254 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 CD200P41217 278 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 GPM6AP51674 278 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 ESCO2Q56NI9 601 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 NHLRC3Q5JS37 347 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 SLC51BQ86UW2 128 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 ITLN1Q8WWA0 313 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 NEU4Q8WWR8 484 aaPredicted RBP11.29□□□□□ -0.6
LIMS1-204ENST00000409441 MEGF10Q96KG7 1140 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 SULT4A1Q9BR01 284 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 NECAP2Q9NVZ3 263 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 TNFSF18Q9UNG2 199 aa11.29□□□□□ -0.6
LIMS1-204ENST00000409441 FLNBO75369 2602 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms