RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 OR51T1Q8NGJ9 327 aa22.98■■□□□ 1.27
HMGB1-205ENST00000399494 PHYHIPQ92561 330 aa22.98■■□□□ 1.27
HMGB1-205ENST00000399494 hADV38S2A0JD32 116 aa22.97■■□□□ 1.27
HMGB1-205ENST00000399494 MEX3AA1L020 520 aaKnown RBP22.97■■□□□ 1.27
HMGB1-205ENST00000399494 FUOMA2VDF0 154 aa22.97■■□□□ 1.27
HMGB1-205ENST00000399494 SLC33A1O00400 549 aaPredicted RBP22.97■■□□□ 1.27
HMGB1-205ENST00000399494 SC5DO75845 299 aa22.97■■□□□ 1.27
HMGB1-205ENST00000399494 GLIPR1L1Q6UWM5 242 aa22.97■■□□□ 1.27
HMGB1-205ENST00000399494 Q8NFD4 153 aa22.97■■□□□ 1.27
HMGB1-205ENST00000399494 MMP28Q9H239 520 aa22.97■■□□□ 1.27
HMGB1-205ENST00000399494 ST3GAL6Q9Y274 331 aa22.97■■□□□ 1.27
HMGB1-205ENST00000399494 LRRC42Q9Y546 428 aa22.97■■□□□ 1.27
HMGB1-205ENST00000399494 HSPB6O14558 160 aa22.96■■□□□ 1.27
HMGB1-205ENST00000399494 FBXO24O75426 580 aa22.96■■□□□ 1.27
HMGB1-205ENST00000399494 UCHL1P09936 223 aa22.96■■□□□ 1.27
HMGB1-205ENST00000399494 SRMP19623 302 aa22.96■■□□□ 1.27
HMGB1-205ENST00000399494 DLX6P56179 175 aa22.96■■□□□ 1.27
HMGB1-205ENST00000399494 TRAPPC6BQ86SZ2 158 aa22.96■■□□□ 1.27
HMGB1-205ENST00000399494 SPARTQ8N0X7 666 aa22.96■■□□□ 1.27
HMGB1-205ENST00000399494 WIPF2Q8TF74 440 aaPredicted RBP22.96■■□□□ 1.27
HMGB1-205ENST00000399494 UQCC2Q9BRT2 126 aa22.96■■□□□ 1.27
HMGB1-205ENST00000399494 C17orf98A8MV24 154 aa22.95■■□□□ 1.26
HMGB1-205ENST00000399494 ARL6IP5O75915 188 aa22.95■■□□□ 1.26
HMGB1-205ENST00000399494 GTF2F2P13984 249 aa22.95■■□□□ 1.26
HMGB1-205ENST00000399494 P2RX3P56373 397 aa22.95■■□□□ 1.26
HMGB1-205ENST00000399494 RBM11P57052 281 aaKnown RBP22.95■■□□□ 1.26
HMGB1-205ENST00000399494 PAN3Q58A45 887 aaKnown RBP22.95■■□□□ 1.26
HMGB1-205ENST00000399494 GLT8D1Q68CQ7 371 aa22.95■■□□□ 1.26
HMGB1-205ENST00000399494 ZNF782Q6ZMW2 699 aaPredicted RBP22.95■■□□□ 1.26
HMGB1-205ENST00000399494 FOXRED1Q96CU9 486 aaPredicted RBP22.95■■□□□ 1.26
HMGB1-205ENST00000399494 ZNF714Q96N38 554 aa22.95■■□□□ 1.26
HMGB1-205ENST00000399494 ING3Q9NXR8 418 aa22.95■■□□□ 1.26
HMGB1-205ENST00000399494 TCF19Q9Y242 345 aa22.95■■□□□ 1.26
HMGB1-205ENST00000399494 LINC00312Q9Y6C7 94 aa22.95■■□□□ 1.26
HMGB1-205ENST00000399494 A6NDX4 124 aa22.94■■□□□ 1.26
HMGB1-205ENST00000399494 ADARB2-AS1A8MUL3 147 aa22.94■■□□□ 1.26
HMGB1-205ENST00000399494 ZNF728P0DKX0 622 aa22.94■■□□□ 1.26
HMGB1-205ENST00000399494 ERP29P30040 261 aaKnown RBP22.94■■□□□ 1.26
HMGB1-205ENST00000399494 GP2P55259 537 aaKnown RBP22.94■■□□□ 1.26
HMGB1-205ENST00000399494 ATXN7L3Q14CW9 347 aaPredicted RBP22.94■■□□□ 1.26
HMGB1-205ENST00000399494 PLA1AQ53H76 456 aa22.94■■□□□ 1.26
HMGB1-205ENST00000399494 TMEM91Q6ZNR0 172 aa22.94■■□□□ 1.26
HMGB1-205ENST00000399494 OR4D6Q8NGJ1 314 aa22.94■■□□□ 1.26
HMGB1-205ENST00000399494 MRAPQ8TCY5 172 aa22.94■■□□□ 1.26
HMGB1-205ENST00000399494 FCGR1BQ92637 280 aa22.94■■□□□ 1.26
HMGB1-205ENST00000399494 MALSU1Q96EH3 234 aa22.94■■□□□ 1.26
HMGB1-205ENST00000399494 KIAA2026Q5HYC2 2103 aa22.94■■□□□ 1.26
HMGB1-205ENST00000399494 NOTCH3Q9UM47 2321 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 OR7C1O76099 320 aaPredicted RBP22.93■■□□□ 1.26
HMGB1-205ENST00000399494 CSN2P05814 226 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 PSMB9P28065 219 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 LOXL3P58215 753 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 FABP5Q01469 135 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 AESQ08117 197 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 NHLRC3Q5JS37 347 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 KRBOX4Q5JUW0 171 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 LDLRAD2Q5SZI1 272 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 LINC00596Q86U02 117 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 LRRTM1Q86UE6 522 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 NDUFA11Q86Y39 141 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 R3HDM4Q96D70 268 aa22.93■■□□□ 1.26
HMGB1-205ENST00000399494 PPIL3Q9H2H8 161 aaKnown RBP22.93■■□□□ 1.26
HMGB1-205ENST00000399494 TBL2Q9Y4P3 447 aaKnown RBP22.93■■□□□ 1.26
HMGB1-205ENST00000399494 DNAH3Q8TD57 4116 aa22.92■■□□□ 1.26
HMGB1-205ENST00000399494 TRGV10A0A0A0MS01 117 aa22.92■■□□□ 1.26
HMGB1-205ENST00000399494 A0A1W2PP11 408 aa22.92■■□□□ 1.26
HMGB1-205ENST00000399494 ODF3BA8MYP8 253 aa22.92■■□□□ 1.26
HMGB1-205ENST00000399494 SSX1Q16384 188 aa22.92■■□□□ 1.26
HMGB1-205ENST00000399494 UBE2UQ5VVX9 321 aa22.92■■□□□ 1.26
HMGB1-205ENST00000399494 ZNF773Q6PK81 442 aa22.92■■□□□ 1.26
HMGB1-205ENST00000399494 CITED2Q99967 270 aaPredicted RBP22.92■■□□□ 1.26
HMGB1-205ENST00000399494 WNT10AQ9GZT5 417 aa22.92■■□□□ 1.26
HMGB1-205ENST00000399494 NECAP2Q9NVZ3 263 aa22.92■■□□□ 1.26
HMGB1-205ENST00000399494 NDUFB11Q9NX14 153 aa22.92■■□□□ 1.26
HMGB1-205ENST00000399494 GEMIN2O14893 280 aaKnown RBP22.91■■□□□ 1.26
HMGB1-205ENST00000399494 ARG1P05089 322 aa22.91■■□□□ 1.26
HMGB1-205ENST00000399494 GLIPR1P48060 266 aa22.91■■□□□ 1.26
HMGB1-205ENST00000399494 MPV17LQ2QL34 196 aa22.91■■□□□ 1.26
HMGB1-205ENST00000399494 TCF23Q7RTU1 214 aa22.91■■□□□ 1.26
HMGB1-205ENST00000399494 TMEM219Q86XT9 240 aa22.91■■□□□ 1.26
HMGB1-205ENST00000399494 LYPD6Q86Y78 171 aa22.91■■□□□ 1.26
HMGB1-205ENST00000399494 PRSS22Q9GZN4 317 aa22.91■■□□□ 1.26
HMGB1-205ENST00000399494 UBE2J1Q9Y385 318 aaPredicted RBP22.91■■□□□ 1.26
HMGB1-205ENST00000399494 TRAV24A0A0B4J272 114 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 CCRL2O00421 344 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 CRTAPO75718 401 aaPredicted RBP22.9■■□□□ 1.26
HMGB1-205ENST00000399494 RBP4P02753 201 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 CALRP27797 417 aaKnown RBP22.9■■□□□ 1.26
HMGB1-205ENST00000399494 SSX2Q16385 188 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 KCTD21Q4G0X4 260 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 ATAD3CQ5T2N8 411 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 ZNF626Q68DY1 528 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 Q6ZS46 218 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 OR4F17Q8NGA8 305 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 OR11H6Q8NGC7 330 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 OR13D1Q8NGV5 346 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 MRPS24Q96EL2 167 aaKnown RBP22.9■■□□□ 1.26
HMGB1-205ENST00000399494 OR4F4Q96R69 305 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 ABCB10Q9NRK6 738 aa22.9■■□□□ 1.26
HMGB1-205ENST00000399494 AURKAIP1Q9NWT8 199 aaPredicted RBP22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms