RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 OR5H14A6NHG9 310 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 DBX1A6NMT0 343 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 IFNL4K9M1U5 179 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 CCSO14618 274 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 CFDP00746 253 aaPredicted RBP8.6□□□□□ -1.03
VPS53-202ENST00000389040 RPA2P15927 270 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 TNFRSF1AP19438 455 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 ATP5J2P56134 94 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 RBM11P57052 281 aaKnown RBP8.6□□□□□ -1.03
VPS53-202ENST00000389040 ARPC4P59998 168 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 SURF2Q15527 256 aaPredicted RBP8.6□□□□□ -1.03
VPS53-202ENST00000389040 SLC25A26Q70HW3 274 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 KCTD9Q7L273 389 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 ZDHHC23Q8IYP9 409 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 NRGNQ92686 78 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 ERGIC1Q969X5 290 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 TMEM230Q96A57 120 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 SULT4A1Q9BR01 284 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 RTBDNQ9BSG5 229 aaPredicted RBP8.6□□□□□ -1.03
VPS53-202ENST00000389040 IL19Q9UHD0 177 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 ANXA10Q9UJ72 324 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 FZR1Q9UM11 496 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 NBPF19A0A087WUL8 3843 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 RAI1Q7Z5J4 1906 aaPredicted RBP8.6□□□□□ -1.03
VPS53-202ENST00000389040 HRNRQ86YZ3 2850 aaPredicted RBP8.6□□□□□ -1.03
VPS53-202ENST00000389040 ANKRD30BLA7E2S9 258 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 FAM25EA8MYX2 175 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 NDUFS8O00217 210 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 RP2O75695 350 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 DTYMKP23919 212 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 BAMBIQ13145 260 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 TESK1Q15569 626 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 CEACAM21Q3KPI0 293 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 OR2T2Q6IF00 324 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 HPSE2Q8WWQ2 592 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 VRK1Q99986 396 aaPredicted RBP8.6□□□□□ -1.03
VPS53-202ENST00000389040 CMSS1Q9BQ75 279 aaKnown RBP8.6□□□□□ -1.03
VPS53-202ENST00000389040 ARL6Q9H0F7 186 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 DECR2Q9NUI1 292 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 COMMD9Q9P000 198 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 MPC1Q9Y5U8 109 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 ITPR2Q14571 2701 aa8.6□□□□□ -1.03
VPS53-202ENST00000389040 NAV2Q8IVL1 2488 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.59□□□□□ -1.03
VPS53-202ENST00000389040 LINC00862A6NCI5 91 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 PDCD6O75340 191 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 SFT2D2O95562 160 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 FCGR3AP08637 254 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 PI3P19957 117 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 ECI1P42126 302 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 GPM6AP51674 278 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 CLLU1Q5K131 121 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 DMRTA1Q5VZB9 504 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 TMEM65Q6PI78 240 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 Q8NFD4 153 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 SEC22AQ96IW7 307 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 CITED4Q96RK1 184 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 FGF23Q9GZV9 251 aaPredicted RBP8.59□□□□□ -1.03
VPS53-202ENST00000389040 MFFQ9GZY8 342 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 HEATR1Q9H583 2144 aaKnown RBP8.59□□□□□ -1.03
VPS53-202ENST00000389040 ABCA12Q86UK0 2595 aa8.59□□□□□ -1.03
VPS53-202ENST00000389040 A0A0B4J2A0 478 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 RPS10-NUDT3A0A1W2PQS6 291 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 IGHV1-46P01743 117 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 SLC25A4P12235 298 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 GLRA1P23415 457 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 CDKN1AP38936 164 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 GATA4P43694 442 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 HAAOP46952 286 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 NPBWR2P48146 333 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 SUPT4H1P63272 117 aaKnown RBP8.58□□□□□ -1.04
VPS53-202ENST00000389040 C11orf87Q6NUJ2 197 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 BRICD5Q6PL45 260 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 GSG1LQ6UXU4 331 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 ZNF546Q86UE3 836 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 SAXO1Q8IYX7 474 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 PPP1R1CQ8WVI7 109 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 DYRK2Q92630 601 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 SLAMF9Q96A28 289 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 ZNF2Q9BSG1 426 aaPredicted RBP8.58□□□□□ -1.04
VPS53-202ENST00000389040 SHPKQ9UHJ6 478 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 C14orf166Q9Y224 244 aaKnown RBP8.58□□□□□ -1.04
VPS53-202ENST00000389040 LRBAP50851 2863 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 ROS1P08922 2347 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A10PA6NDY2 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A18PA6NE21 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A16PA6NEW6 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A20PA6NIJ5 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A8PA6NJQ4 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A7PA6NKC0 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A22PA8MWA6 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A12PA8MX19 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A5PA8MXJ8 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A23PA8MXZ1 464 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 ZNF732B4DXR9 585 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 OR7C1O76099 320 aaPredicted RBP8.58□□□□□ -1.04
VPS53-202ENST00000389040 FSTL3O95633 263 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 PTBP3O95758 552 aaKnown RBP8.58□□□□□ -1.04
VPS53-202ENST00000389040 IGHV4-39P01824 125 aa8.58□□□□□ -1.04
VPS53-202ENST00000389040 FAM90A15PP0C7V4 464 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms