RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 GAL3ST2Q9H3Q3 398 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 RNF167Q9H6Y7 350 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 TAS2R3Q9NYW6 316 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 OR6C3Q9NZP0 311 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 FAM96BQ9Y3D0 163 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 PEX16Q9Y5Y5 336 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 SESN1Q9Y6P5 492 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 A0A0A6YYD4 124 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A10PA6NDY2 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A18PA6NE21 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A16PA6NEW6 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A20PA6NIJ5 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A8PA6NJQ4 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A7PA6NKC0 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A22PA8MWA6 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A12PA8MX19 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A5PA8MXJ8 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A23PA8MXZ1 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 PDCD5O14737 125 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 ARG1P05089 322 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A15PP0C7V4 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A13PP0C7W8 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A14PP0C7W9 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM90A24PP0C7X0 464 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 ARSBP15848 533 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 CD36P16671 472 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 RAB3BP20337 219 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 GADD45AP24522 165 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 PAX5Q02548 391 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 PLA2G7Q13093 441 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 NKAPLQ5M9Q1 402 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 UTF1Q5T230 341 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 SLC35E4Q6ICL7 350 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 LHFPL4Q7Z7J7 247 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 RTN4RL2Q86UN3 420 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 OR13D1Q8NGV5 346 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 KCNG3Q8TAE7 436 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 CCDC107Q8WV48 283 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 TAF15Q92804 592 aaKnown RBP eCLIP10.87□□□□□ -0.67
VPS28-202ENST00000377348 FAM3DQ96BQ1 224 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 TMEM133Q9H2Q1 129 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 CALYQ9NYX4 217 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 SSR3Q9UNL2 185 aa10.87□□□□□ -0.67
VPS28-202ENST00000377348 IGHV2-26A0A0B4J1V2 119 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 A0A0B4J203 849 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 LOC100506127A0A0U1RQW1 187 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 KBTBD11-OT1A0A1B0GTJ5 212 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 TMEM30CPA0ZSE6 113 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 UBE2QL1A1L167 161 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 ZNF729A6NN14 1252 aaPredicted RBP10.86□□□□□ -0.67
VPS28-202ENST00000377348 ODF3BA8MYP8 253 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 MCRIP1C9JLW8 97 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 PDCD6O75340 191 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 PAHP00439 452 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 IGHV4-59P01825 116 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 FBP1P09467 338 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 CGB3P0DN86 165 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 CGB7P0DN87 165 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 FUT3P21217 361 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 FGF9P31371 208 aaPredicted RBP10.86□□□□□ -0.67
VPS28-202ENST00000377348 SSTR5P35346 364 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 DYNC1I2Q13409 638 aaKnown RBP10.86□□□□□ -0.67
VPS28-202ENST00000377348 LTC4SQ16873 150 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 C2orf76Q3KRA6 126 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 MIDNQ504T8 468 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 LDLRAD2Q5SZI1 272 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 HEPN1Q6WQI6 88 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 ZNF497Q6ZNH5 498 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 RFESDQ8TAC1 157 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 UBALD1Q8TB05 177 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 TM2D1Q9BX74 207 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 LPAR5Q9H1C0 372 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 NCOR1P1Q9H4R4 102 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 SPACA1Q9HBV2 294 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 ETAA1Q9NY74 926 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 ZNRD1Q9P1U0 126 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 STEAP1Q9UHE8 339 aa10.86□□□□□ -0.67
VPS28-202ENST00000377348 TMEM272A0A1B0GTI8 110 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 TRIM64CA6NLI5 447 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 IFITM5A6NNB3 132 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 AIPO00170 330 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 IL1AP01583 271 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 MT-ND4P03905 459 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 SMIM18P0DKX4 95 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 SLC2A2P11168 524 aaPredicted RBP10.85□□□□□ -0.67
VPS28-202ENST00000377348 NFYBP25208 207 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 CHATP28329 748 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 PSMD7P51665 324 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 LGALS4P56470 323 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 RBM39Q14498 530 aaKnown RBP10.85□□□□□ -0.67
VPS28-202ENST00000377348 PLA1AQ53H76 456 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 ZNF626Q68DY1 528 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 OR2W3Q7Z3T1 314 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 C6orf201Q7Z4U5 140 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 LDLRAD3Q86YD5 345 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 DYNAPQ8N1N2 210 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 ABHD12Q8N2K0 398 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 ZNF565Q8N9K5 539 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 OR11H6Q8NGC7 330 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 OR4K15Q8NH41 348 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms