RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 CNTD2Q9H8S5 307 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 TNFSF18Q9UNG2 199 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 SERF2P84101 59 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 INSM1Q01101 510 aaPredicted RBP13.56□□□□□ -0.24
COL5A1-201ENST00000371817 CA13Q8N1Q1 262 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 AGBL5Q8NDL9 886 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 KCNE4Q8WWG9 221 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 PTX4Q96A99 478 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 CITED1Q99966 193 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 TRBV9A0A0B4J1U6 114 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 TNFSF11O14788 317 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 PMELP40967 661 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 EWSR1Q01844 656 aaKnown RBP eCLIP13.56□□□□□ -0.24
COL5A1-201ENST00000371817 H3BMH7 237 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 SBK3P0C264 359 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 CCR5P51681 352 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 ABHD14AQ9BUJ0 271 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 HDGFL3Q9Y3E1 203 aa13.56□□□□□ -0.24
COL5A1-201ENST00000371817 DNASE2O00115 360 aaPredicted RBP13.55□□□□□ -0.24
COL5A1-201ENST00000371817 SNAI1O95863 264 aaPredicted RBP13.55□□□□□ -0.24
COL5A1-201ENST00000371817 TSPO2Q5TGU0 170 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 SPANXN1Q5VSR9 72 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 PTPMT1Q8WUK0 201 aaPredicted RBP13.55□□□□□ -0.24
COL5A1-201ENST00000371817 SSMEM1Q8WWF3 244 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 RARRES2Q99969 163 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 CA6P23280 308 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 OR8I2Q8N0Y5 310 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 KIR3DX1Q9H7L2 352 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 DPRXA6NFQ7 191 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 YBX1P67809 324 aaKnown RBP13.55□□□□□ -0.24
COL5A1-201ENST00000371817 LYG1Q8N1E2 194 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 ZG16BQ96DA0 208 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 ANKRD10Q9NXR5 420 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 A1L4Q6 167 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 AMY1AP04745 511 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 ATOH7Q8N100 152 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 OR4S2Q8NH73 311 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 MRGPRX4Q96LA9 322 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 TRAV8-7A0A075B6U6 113 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 MDKP21741 143 aaPredicted RBP13.55□□□□□ -0.24
COL5A1-201ENST00000371817 KCNE3Q9Y6H6 103 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 HSPB1P04792 205 aaKnown RBP13.55□□□□□ -0.24
COL5A1-201ENST00000371817 KCNAB1Q14722 419 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 TMEM174Q8WUU8 243 aa13.55□□□□□ -0.24
COL5A1-201ENST00000371817 DHCR7Q9UBM7 475 aaKnown RBP13.55□□□□□ -0.24
COL5A1-201ENST00000371817 FXYD1O00168 92 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 PRF1P14222 555 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 RCC1P18754 421 aaPredicted RBP13.54□□□□□ -0.24
COL5A1-201ENST00000371817 MEF2BQ02080 365 aaPredicted RBP13.54□□□□□ -0.24
COL5A1-201ENST00000371817 RIPPLY2Q5TAB7 128 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 HS3ST3A1Q9Y663 406 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 B4GALT1P15291 398 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 EMDP50402 254 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 WDR25Q64LD2 544 aaPredicted RBP13.54□□□□□ -0.24
COL5A1-201ENST00000371817 WDR34Q96EX3 536 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 GABRG3Q99928 467 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 MBD1Q9UIS9 605 aaPredicted RBP13.54□□□□□ -0.24
COL5A1-201ENST00000371817 MMP17Q9ULZ9 603 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 NPIPB8E9PQR5 432 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 NPIPB9F8W1W9 429 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 NPIPB7O75200 414 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 NGFP01138 241 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 LGALS3P17931 250 aaKnown RBP13.54□□□□□ -0.24
COL5A1-201ENST00000371817 OR1F12Q8NHA8 337 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 CCSMST1Q4G0I0 132 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 IBA57Q5T440 356 aaKnown RBP13.54□□□□□ -0.24
COL5A1-201ENST00000371817 TXNRD2Q9NNW7 524 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 STARD10Q9Y365 291 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 MTCH2Q9Y6C9 303 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 A0A1W2PNR3 127 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 ERVH48-1M5A8F1 160 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 PDCD6O75340 191 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 TIMP1P01033 207 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 OTX1P32242 354 aaPredicted RBP13.54□□□□□ -0.24
COL5A1-201ENST00000371817 FZD5Q13467 585 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 C10orf113Q5VZT2 155 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 ALX4Q9H161 411 aaPredicted RBP13.54□□□□□ -0.24
COL5A1-201ENST00000371817 A0A1B0GU03 582 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 MRAP2Q96G30 205 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 MPLP40238 635 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 CKS1BP61024 79 aa13.54□□□□□ -0.24
COL5A1-201ENST00000371817 TRDCB7Z8K6 153 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 DUSP2Q05923 314 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 PYCR3Q53H96 274 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 EPPINO95925 133 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 FCGR3AP08637 254 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 KLF9Q13886 244 aaPredicted RBP13.53□□□□□ -0.24
COL5A1-201ENST00000371817 NEUROG1Q92886 237 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 PARLQ9H300 379 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 PDLIM7Q9NR12 457 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 WNT16Q9UBV4 365 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 ARFGEF3Q5TH69 2177 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 IGKV6-21A0A0C4DH24 114 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 ZNF729A6NN14 1252 aaPredicted RBP13.53□□□□□ -0.24
COL5A1-201ENST00000371817 K7ESF4 209 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 ALOX12BO75342 701 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 FCARP24071 287 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 CDAP32320 146 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 LINC00696Q6ZRV3 163 aa13.53□□□□□ -0.24
COL5A1-201ENST00000371817 BEX4Q9NWD9 120 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms