RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PDLIM4P50479 330 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 LYG2Q86SG7 212 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 OR2Y1Q8NGV0 311 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 OR6X1Q8NH79 312 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 RHOFQ9HBH0 211 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 RGPD2P0DJD1 1756 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 DOT1LQ8TEK3 1739 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 A0A0U1RRA0 63 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 SNRPGP15A8MWD9 76 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 FOXS1O43638 330 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 GFI1BQ5VTD9 330 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 ASB10Q8WXI3 467 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 KLHDC2Q9Y2U9 406 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 J3QR06 171 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 LY6HO94772 140 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 HIST1H1DP16402 221 aaKnown RBP6.41□□□□□ -1.38
VPS13A-202ENST00000357409 FPR2P25090 351 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 MOB1BQ7L9L4 216 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 SHISA5Q8N114 240 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 OR10D4PQ8NGN7 298 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 A0A1W2PPV9 198 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 SYNGR1O43759 233 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 AMY1AP04745 511 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 EVX1P49640 407 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 COMPP49747 757 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-202ENST00000357409 RAC3P60763 192 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 DHRS11Q6UWP2 260 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 BEND2Q8NDZ0 799 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 DUSP18Q8NEJ0 188 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 HGDQ93099 445 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 RASL12Q9NYN1 266 aa6.41□□□□□ -1.38
VPS13A-202ENST00000357409 TCRBV16S1A1N1A0A5B0 115 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 COL8A1P27658 744 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 UBE2L3P68036 154 aaKnown RBP6.4□□□□□ -1.38
VPS13A-202ENST00000357409 TRA2AQ13595 282 aaKnown RBP eCLIP6.4□□□□□ -1.38
VPS13A-202ENST00000357409 RCC1P18754 421 aaPredicted RBP6.4□□□□□ -1.38
VPS13A-202ENST00000357409 SSX8Q7RTT4 187 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 MRPL24Q96A35 216 aaKnown RBP6.4□□□□□ -1.38
VPS13A-202ENST00000357409 ADAT3Q96EY9 351 aaPredicted RBP6.4□□□□□ -1.38
VPS13A-202ENST00000357409 ETV7Q9Y603 341 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 PGPA6NDG6 321 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 SLC17A2O00624 439 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 PNPP00491 289 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 CTF1Q16619 201 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 FAM210AQ96ND0 272 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 DIRC2Q96SL1 478 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 FXYD3Q14802 87 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 DCAF12L2Q5VW00 463 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 IL17RELQ6ZVW7 336 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 MRAPQ8TCY5 172 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 NEU1Q99519 415 aa6.4□□□□□ -1.38
VPS13A-202ENST00000357409 GOLGB1Q14789 3259 aaKnown RBP6.4□□□□□ -1.38
VPS13A-202ENST00000357409 ARID1BQ8NFD5 2236 aaPredicted RBP6.4□□□□□ -1.38
VPS13A-202ENST00000357409 FBP1P09467 338 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 RFPL3SP0C7P2 107 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 FAHD1Q6P587 224 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 OIT3Q8WWZ8 545 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 OR4C12Q96R67 309 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 SEBOXQ9HB31 216 aaPredicted RBP6.4□□□□□ -1.39
VPS13A-202ENST00000357409 THYN1Q9P016 225 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 PPIAL4CA0A0B4J2A2 164 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 A0A1W2PQM1 296 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 H0YL77 283 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 FCN1O00602 326 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 PPIAL4GP0DN37 164 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 TBX15Q96SF7 602 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 ZNF552Q9H707 407 aaPredicted RBP6.4□□□□□ -1.39
VPS13A-202ENST00000357409 RNF24Q9Y225 148 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 AMMECR1Q9Y4X0 333 aaPredicted RBP6.4□□□□□ -1.39
VPS13A-202ENST00000357409 CCL27Q9Y4X3 112 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 PRSS8Q16651 343 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 C11orf87Q6NUJ2 197 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 ZNF519Q8TB69 540 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 GPX8Q8TED1 209 aa6.4□□□□□ -1.39
VPS13A-202ENST00000357409 IGHV1-45A0A0A0MS14 117 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 TMEM200CA6NKL6 621 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 SMIM18P0DKX4 95 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 PPIFP30405 207 aaKnown RBP6.39□□□□□ -1.39
VPS13A-202ENST00000357409 ZNF658BQ4V348 819 aaPredicted RBP6.39□□□□□ -1.39
VPS13A-202ENST00000357409 SCGB1D4Q6XE38 83 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 GPA33Q99795 319 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 OR6C3Q9NZP0 311 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 OR2A4O95047 310 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 CTSDP07339 412 aaPredicted RBP6.39□□□□□ -1.39
VPS13A-202ENST00000357409 NMUP48645 174 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 KIAA1644Q3SXP7 199 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 FDX2Q6P4F2 183 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 OR2A7Q96R45 310 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 TBX19O60806 448 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 CDC20Q12834 499 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 GUK1Q16774 197 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 ZNF501Q96CX3 271 aaPredicted RBP6.39□□□□□ -1.39
VPS13A-202ENST00000357409 AMELYQ99218 206 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 FGF20Q9NP95 211 aaPredicted RBP6.39□□□□□ -1.39
VPS13A-202ENST00000357409 SLX4Q8IY92 1834 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 PIGBOS1A0A0B4J2F0 54 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 TOX3O15405 576 aaPredicted RBP6.39□□□□□ -1.39
VPS13A-202ENST00000357409 JTBO76095 146 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 PDPNQ86YL7 162 aa6.39□□□□□ -1.39
VPS13A-202ENST00000357409 MYH10P35580 1976 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms