RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 LDLRAD3Q86YD5 345 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 SPICQ8N5J4 248 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 OR10R2Q8NGX6 335 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 MCFD2Q8NI22 146 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 AP3S1Q92572 193 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 LEAP2Q969E1 77 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 FAHD2AQ96GK7 314 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 ABCG5Q9H222 651 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 MYOZ1Q9NP98 299 aaPredicted RBP3.31□□□□□ -1.88
LIG4-201ENST00000356922 SLC25A10Q9UBX3 287 aaPredicted RBP3.31□□□□□ -1.88
LIG4-201ENST00000356922 KLK11Q9UBX7 282 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 KIF25Q9UIL4 384 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 RBM7Q9Y580 266 aaKnown RBP3.31□□□□□ -1.88
LIG4-201ENST00000356922 V9GYH0 126 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 IGKV1-6A0A0C4DH72 117 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 SH2D1BO14796 132 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 FSTL3O95633 263 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 FUT3P21217 361 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 ARF6P62330 175 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 GNB2P62879 340 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 IL13RA1P78552 427 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 NDUFA5Q16718 116 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 TMEM155Q4W5P6 130 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 PAN3Q58A45 887 aaKnown RBP3.31□□□□□ -1.88
LIG4-201ENST00000356922 LRRC10Q5BKY1 277 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 RNASE12Q5GAN4 147 aaKnown RBP3.31□□□□□ -1.88
LIG4-201ENST00000356922 SPIN3Q5JUX0 258 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 CNIH2Q6PI25 160 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 IL17RELQ6ZVW7 336 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 OR8H2Q8N162 312 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 PNKDQ8N490 385 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 OR8B3Q8NGG8 313 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 CREB3L1Q96BA8 519 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 OR8B2Q96RD0 313 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 BCL7BQ9BQE9 202 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 AUNIPQ9H7T9 357 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 PLEKHJ1Q9NW61 149 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 ABRACLQ9P1F3 81 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 CLN8Q9UBY8 286 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 DNHD1Q96M86 4753 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 BOLA2-SMG1P6H3BVE0 249 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 IFNL4K9M1U5 179 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 NDUFS8O00217 210 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 ZNF780AO75290 641 aaPredicted RBP3.31□□□□□ -1.88
LIG4-201ENST00000356922 PDCD6O75340 191 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 NAPSAO96009 420 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 CHRM2P08172 466 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 ZNF134P52741 427 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 DLX6P56179 175 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 LOXL1Q08397 574 aaPredicted RBP3.31□□□□□ -1.88
LIG4-201ENST00000356922 HERPUD1Q15011 391 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 C17orf58Q2M2W7 97 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 OR52W1Q6IF63 320 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 ZNF497Q6ZNH5 498 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 OR2W3Q7Z3T1 314 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 LYSMD2Q8IV50 215 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 Q8IYB0 196 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 FAM185AQ8N0U4 392 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 MUC20Q8N307 709 aaPredicted RBP3.31□□□□□ -1.88
LIG4-201ENST00000356922 ZNF561Q8N587 486 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 LY6G5BQ8NDX9 201 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 OR6Q1Q8NGQ2 317 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 MRPL30Q8TCC3 161 aaKnown RBP3.31□□□□□ -1.88
LIG4-201ENST00000356922 RAB39BQ96DA2 213 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 RAB3CQ96E17 227 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 IFT22Q9H7X7 185 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 DIABLOQ9NR28 239 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 CCDC59Q9P031 241 aaKnown RBP3.31□□□□□ -1.88
LIG4-201ENST00000356922 GHRLQ9UBU3 117 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 OPN4Q9UHM6 478 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 RPUSD1Q9UJJ7 312 aaKnown RBP3.31□□□□□ -1.88
LIG4-201ENST00000356922 STAB1Q9NY15 2570 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 IGHV3OR16-10A0A075B7F0 116 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 XRCC3O43542 346 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 TGFAP01135 160 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 SCTP09683 121 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 CSF3P09919 207 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 UBBP0CG47 229 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 HIST1H1DP16402 221 aaKnown RBP3.3□□□□□ -1.88
LIG4-201ENST00000356922 DSCR9P59020 149 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 LINC00205P59089 165 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 TAS2R20P59543 309 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 IFITM3Q01628 133 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 IL13RA2Q14627 380 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 FAM189A2Q15884 450 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 LTC4SQ16873 150 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 IGSF11Q5DX21 431 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 KRBOX4Q5JUW0 171 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 SHEQ5VZ18 495 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 CCDC190Q86UF4 302 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 GAPTQ8N292 157 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 SUN5Q8TC36 379 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 MRGPRDQ8TDS7 321 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 SNAPC3Q92966 411 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 PTX4Q96A99 478 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 MRPS24Q96EL2 167 aaKnown RBP3.3□□□□□ -1.88
LIG4-201ENST00000356922 NEIL1Q96FI4 390 aaPredicted RBP3.3□□□□□ -1.88
LIG4-201ENST00000356922 COX4I2Q96KJ9 171 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 SNX22Q96L94 193 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 SSBP3Q9BWW4 388 aaPredicted RBP3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms