RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 NHLH2Q02577 135 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 ZNF565Q8N9K5 539 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 RXFP4Q8TDU9 374 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 SAT2Q96F10 170 aaPredicted RBP16.51■□□□□ 0.23
COL9A3-201ENST00000343916 SEC11CQ9BY50 192 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 ZDHHC11Q9H8X9 412 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 ZFP57Q9NU63 452 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 UBE2J1Q9Y385 318 aaPredicted RBP16.51■□□□□ 0.23
COL9A3-201ENST00000343916 PRR14LQ5THK1 2151 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 DSPP15924 2871 aaKnown RBP16.51■□□□□ 0.23
COL9A3-201ENST00000343916 TRAV24A0A0B4J272 114 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 ST8SIA3O43173 380 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 TNFSF12O43508 249 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 GAPDHP04406 335 aaKnown RBP16.51■□□□□ 0.23
COL9A3-201ENST00000343916 CRYBA1P05813 215 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 ZNF573Q86YE8 665 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 NRIP2Q9BQI9 281 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 OPA3Q9H6K4 179 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 CCL28Q9NRJ3 127 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 COA4Q9NYJ1 87 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 RCL1Q9Y2P8 373 aaKnown RBP16.51■□□□□ 0.23
COL9A3-201ENST00000343916 TMED3Q9Y3Q3 217 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 MPC1Q9Y5U8 109 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 ATP23Q9Y6H3 246 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 BOD1L1Q8NFC6 3051 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 TRDCB7Z8K6 153 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 GLAP06280 429 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 IL34Q6ZMJ4 242 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 FAM58AQ8N1B3 248 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 TMEM178AQ8NBL3 297 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 DMBX1Q8NFW5 382 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 MRPL30Q8TCC3 161 aaKnown RBP16.5■□□□□ 0.23
COL9A3-201ENST00000343916 BIN3Q9NQY0 253 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 TNFSF10P50591 281 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 CCL11P51671 97 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 Q6ZRG5 221 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 OR4D5Q8NGN0 318 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 NANOS1Q8WY41 292 aaKnown RBP16.5■□□□□ 0.23
COL9A3-201ENST00000343916 GP6Q9HCN6 339 aa16.5■□□□□ 0.23
COL9A3-201ENST00000343916 CNOT1A5YKK6 2376 aaKnown RBP16.49■□□□□ 0.23
COL9A3-201ENST00000343916 LYZL6O75951 148 aa16.49■□□□□ 0.23
COL9A3-201ENST00000343916 IDH3GP51553 393 aaPredicted RBP16.49■□□□□ 0.23
COL9A3-201ENST00000343916 AKIRIN2Q53H80 203 aa16.49■□□□□ 0.23
COL9A3-201ENST00000343916 P4HA3Q7Z4N8 544 aa16.49■□□□□ 0.23
COL9A3-201ENST00000343916 ZNF695Q8IW36 515 aa16.49■□□□□ 0.23
COL9A3-201ENST00000343916 UBAC2Q8NBM4 344 aa16.49■□□□□ 0.23
COL9A3-201ENST00000343916 OR2J1Q9GZK6 312 aa16.49■□□□□ 0.23
COL9A3-201ENST00000343916 TRAV39A0A0B4J263 110 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 KIR2DS1A0A191URI9 304 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 OR5B21A6NL26 309 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 ZNF44P15621 663 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 KIR2DS4P43632 304 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 CAV2P51636 162 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 KIR2DS1Q14954 304 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 OR51I2Q9H344 312 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 OTOGLQ3ZCN5 2332 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 LAMA5O15230 3695 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 MEX3AA1L020 520 aaKnown RBP16.48■□□□□ 0.23
COL9A3-201ENST00000343916 TUSC2O75896 110 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 SLC34A2O95436 690 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 SOX8P57073 446 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 IL24Q13007 206 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 SRSF7Q16629 238 aaKnown RBP eCLIP16.48■□□□□ 0.23
COL9A3-201ENST00000343916 TBC1D28Q2M2D7 210 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 ALKBH6Q3KRA9 238 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 AVPI1Q5T686 147 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 PCSK4Q6UW60 755 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 WDR86Q86TI4 376 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 FDCSPQ8NFU4 85 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 ZNF318Q5VUA4 2279 aa16.48■□□□□ 0.23
COL9A3-201ENST00000343916 NUDT19A8MXV4 375 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 PRSS44E7EML9 344 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 SLC33A1O00400 549 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-201ENST00000343916 GPR137BO60478 399 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 NXPH3O95157 252 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 OR8U9P0C7N5 309 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 SELEP16581 610 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 ZNF14P17017 642 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-201ENST00000343916 IGHV1-2P23083 117 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 B2MP61769 119 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 IL13RA2Q14627 380 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 FAM185AQ8N0U4 392 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 OR8U1Q8NH10 309 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 SH3BGRL3Q9H299 93 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 PLK3Q9H4B4 646 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 DLL3Q9NYJ7 618 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 POMT1Q9Y6A1 747 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 SFTA3P0C7M3 94 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 P2RY1P47900 373 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 FHITP49789 147 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 POLR2GP62487 172 aaKnown RBP eCLIP16.47■□□□□ 0.23
COL9A3-201ENST00000343916 BTNL8Q6UX41 500 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 SELENOHQ8IZQ5 122 aaKnown RBP16.47■□□□□ 0.23
COL9A3-201ENST00000343916 DEFB124Q8NES8 71 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 LILRB1Q8NHL6 650 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-201ENST00000343916 IL1F10Q8WWZ1 152 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 MAGT1Q9H0U3 335 aa16.47■□□□□ 0.23
COL9A3-201ENST00000343916 SPAARA0A1B0GVQ0 90 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 ADAM20O43506 726 aa16.46■□□□□ 0.23
COL9A3-201ENST00000343916 GNMTQ14749 295 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms