RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TNFSF11O14788 317 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 RPS18P62269 152 aaKnown RBP19.24■□□□□ 0.67
TRIM28-202ENST00000341753 DAZAP2Q15038 168 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-202ENST00000341753 SP5Q6BEB4 398 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-202ENST00000341753 SLC25A24Q6NUK1 477 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 SLC35E3Q7Z769 313 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 MAML2Q8IZL2 1156 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-202ENST00000341753 FADS6Q8N9I5 356 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 RSG1Q9BU20 258 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 ZNF665Q9H7R5 613 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 RPL36A-HNRNPH2H7BZ11 118 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 PTBP3O95758 552 aaKnown RBP19.24■□□□□ 0.67
TRIM28-202ENST00000341753 NR2C1P13056 603 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 DDTP30046 118 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 PLA2G5P39877 138 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 TLE4Q04727 773 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 ZIC4Q8N9L1 334 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 OR8G5Q8NG78 346 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 GTF3AQ92664 365 aaKnown RBP19.24■□□□□ 0.67
TRIM28-202ENST00000341753 GNPNAT1Q96EK6 184 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-202ENST00000341753 PACRGQ96M98 296 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-202ENST00000341753 VSIRQ9H7M9 311 aa19.24■□□□□ 0.67
TRIM28-202ENST00000341753 A0A087X0M5 115 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 A0A1B0GX30 115 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 NDUFB7P17568 137 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 SPINK2P20155 84 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 RBM11P57052 281 aaKnown RBP19.23■□□□□ 0.67
TRIM28-202ENST00000341753 ZNF92Q03936 586 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 SLC25A26Q70HW3 274 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 PLPPR1Q8TBJ4 325 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 ALKBH3Q96Q83 286 aaPredicted RBP19.23■□□□□ 0.67
TRIM28-202ENST00000341753 CRLF2Q9HC73 371 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 LOC102723971A0A1B0GUV8 181 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 SYNGR3O43761 229 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 FAM90A2PQ658T7 463 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 C1orf87Q8N0U7 546 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 TMEM56Q96MV1 263 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 SPIN2AQ99865 258 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 SPIN2BQ9BPZ2 258 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 CCL28Q9NRJ3 127 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 TMEM56-RWDD3S4R434 201 aa19.23■□□□□ 0.67
TRIM28-202ENST00000341753 MMP9P14780 707 aa19.22■□□□□ 0.67
TRIM28-202ENST00000341753 ZNF32P17041 273 aa19.22■□□□□ 0.67
TRIM28-202ENST00000341753 NTF4P34130 210 aa19.22■□□□□ 0.67
TRIM28-202ENST00000341753 FOXL2NBQ6ZUU3 175 aa19.22■□□□□ 0.67
TRIM28-202ENST00000341753 OR1F12Q8NHA8 337 aa19.22■□□□□ 0.67
TRIM28-202ENST00000341753 HS3ST6Q96QI5 342 aa19.22■□□□□ 0.67
TRIM28-202ENST00000341753 SELLP14151 372 aa19.22■□□□□ 0.67
TRIM28-202ENST00000341753 FAM27BQ5VT28 67 aa19.22■□□□□ 0.67
TRIM28-202ENST00000341753 ASCL4Q6XD76 172 aa19.22■□□□□ 0.67
TRIM28-202ENST00000341753 RBMXL1Q96E39 390 aaKnown RBP19.22■□□□□ 0.67
TRIM28-202ENST00000341753 ELOA3CA0A087WX78 387 aaPredicted RBP19.21■□□□□ 0.67
TRIM28-202ENST00000341753 SRPXP78539 464 aa19.21■□□□□ 0.67
TRIM28-202ENST00000341753 ZNF611Q8N823 705 aa19.21■□□□□ 0.67
TRIM28-202ENST00000341753 FGFBP3Q8TAT2 258 aa19.21■□□□□ 0.67
TRIM28-202ENST00000341753 EXTL1Q92935 676 aa19.21■□□□□ 0.67
TRIM28-202ENST00000341753 ATP5SQ99766 215 aa19.21■□□□□ 0.67
TRIM28-202ENST00000341753 HIST1H2BLQ99880 126 aa19.21■□□□□ 0.67
TRIM28-202ENST00000341753 SRXN1Q9BYN0 137 aa19.21■□□□□ 0.67
TRIM28-202ENST00000341753 A0A0G2JRQ6 117 aa19.21■□□□□ 0.67
TRIM28-202ENST00000341753 PAX9P55771 341 aa19.21■□□□□ 0.67
TRIM28-202ENST00000341753 RAB35Q15286 201 aa19.21■□□□□ 0.67
TRIM28-202ENST00000341753 NMSQ5H8A3 153 aa19.21■□□□□ 0.67
TRIM28-202ENST00000341753 IL36RNQ9UBH0 155 aa19.21■□□□□ 0.67
TRIM28-202ENST00000341753 TOX3O15405 576 aaPredicted RBP19.2■□□□□ 0.66
TRIM28-202ENST00000341753 CCL4P13236 92 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 IL2RGP31785 369 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 EXT1Q16394 746 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 SSX7Q7RTT5 188 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 REC114Q7Z4M0 266 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 PRO3102Q9H379 93 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 CCL3P10147 92 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 TAS2R30P59541 319 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 ID3Q02535 119 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 HNF4GQ14541 408 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 TMEM211Q6ICI0 200 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 DUSP23Q9BVJ7 150 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 RPRMQ9NS64 109 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 TAAR3PQ9P1P4 343 aa19.2■□□□□ 0.66
TRIM28-202ENST00000341753 A0A0J9YW62 118 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 C3orf80F5H4A9 247 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 CD55P08174 381 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 PKIAP61925 76 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 HERPUD1Q15011 391 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 IFI44Q8TCB0 444 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 LRFN1Q9P244 771 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 SLC22A20A6NK97 555 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 PHOX2AO14813 284 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 DKK1O94907 266 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 HBE1P02100 147 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 TK1P04183 234 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 MRPS34P82930 218 aaKnown RBP19.19■□□□□ 0.66
TRIM28-202ENST00000341753 WDR25Q64LD2 544 aaPredicted RBP19.19■□□□□ 0.66
TRIM28-202ENST00000341753 NECAP1Q8NC96 275 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 OR13D1Q8NGV5 346 aa19.19■□□□□ 0.66
TRIM28-202ENST00000341753 SMCO3A2RU48 225 aa19.18■□□□□ 0.66
TRIM28-202ENST00000341753 TSTD3H0UI37 97 aa19.18■□□□□ 0.66
TRIM28-202ENST00000341753 CLDN34H7C241 214 aa19.18■□□□□ 0.66
TRIM28-202ENST00000341753 SSTP61278 116 aa19.18■□□□□ 0.66
TRIM28-202ENST00000341753 CLEC12BQ2HXU8 276 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms