RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 WDR13Q9H1Z4 485 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 CLCF1Q9UBD9 225 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 NSG2Q9Y328 171 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 ZNF705EA8MWA4 302 aaPredicted RBP8.73□□□□□ -1.01
USP54-201ENST00000339859 KLF4O43474 513 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 PI3P19957 117 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 CDKN1AP38936 164 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 MPV17P39210 176 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 FOXF2Q12947 444 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 PCSK4Q6UW60 755 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 SMIM15Q7Z3B0 74 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 G6PC2Q9NQR9 355 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 MTFP1Q9UDX5 166 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 TRBV5-5A0A0J9YX44 114 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 KRASP01116 189 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 S100A6P06703 90 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 CHATP28329 748 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 NANOS3P60323 173 aaKnown RBP8.72□□□□□ -1.01
USP54-201ENST00000339859 A0A0B4J2A0 478 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 IGHV1-18A0A0C4DH31 117 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 SNRPGP15A8MWD9 76 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 CRYZL1O95825 349 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 OR5G3P0C626 314 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 OPRK1P41145 380 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 FAAP20Q6NZ36 180 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 LILRB1Q8NHL6 650 aaPredicted RBP8.72□□□□□ -1.01
USP54-201ENST00000339859 R3HDM4Q96D70 268 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 WDFY2Q96P53 400 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 ZNF426Q9BUY5 554 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 NAA60Q9H7X0 242 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 KLK11Q9UBX7 282 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 SHPKQ9UHJ6 478 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 COX7A2P2O60397 106 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 RFLNBQ8N5W9 214 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 WFIKKN1Q96NZ8 548 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 AMELYQ99218 206 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 TMPRSS13Q9BYE2 586 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 TMED3Q9Y3Q3 217 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 ZNF729A6NN14 1252 aaPredicted RBP8.72□□□□□ -1.01
USP54-201ENST00000339859 TAAR5O14804 337 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 VSIG8P0DPA2 414 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 MC5RP33032 325 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 IL24Q13007 206 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 FAM90A1Q86YD7 464 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 OR5T1Q8NG75 326 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 ZNF107Q9UII5 783 aaPredicted RBP8.72□□□□□ -1.01
USP54-201ENST00000339859 V9GYS6 101 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 CLEC18AA5D8T8 446 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 TXNL1O43396 289 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 SYNGR1O43759 233 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 ACOT6Q3I5F7 207 aaPredicted RBP8.72□□□□□ -1.01
USP54-201ENST00000339859 ZNF529Q6P280 563 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 CLEC18CQ8NCF0 446 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 OR5R1Q8NH85 324 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 TINAGL1Q9GZM7 467 aaPredicted RBP8.72□□□□□ -1.01
USP54-201ENST00000339859 PLEKHA2Q9HB19 425 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 OR2W1Q9Y3N9 320 aa8.72□□□□□ -1.01
USP54-201ENST00000339859 CCSO14618 274 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 TOX4O94842 621 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 SSX2Q16385 188 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 CTF1Q16619 201 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 PHYHD1Q5SRE7 291 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 IL34Q6ZMJ4 242 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 OR2T6Q8NHC8 308 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 GON7Q9BXV9 100 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 TRAV8-7A0A075B6U6 113 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 CTDSPLO15194 276 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 MBP02144 154 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 TMEM11P17152 192 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 SURF2Q15527 256 aaPredicted RBP8.71□□□□□ -1.01
USP54-201ENST00000339859 FDX2Q6P4F2 183 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 PRNDQ9UKY0 176 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 CSAG2Q9Y5P2 127 aa8.71□□□□□ -1.01
USP54-201ENST00000339859 DOCK8Q8NF50 2099 aa8.71□□□□□ -1.02
USP54-201ENST00000339859 PEA15Q15121 130 aa8.71□□□□□ -1.02
USP54-201ENST00000339859 MMDQ15546 238 aa8.71□□□□□ -1.02
USP54-201ENST00000339859 KCNK15Q9H427 330 aa8.71□□□□□ -1.02
USP54-201ENST00000339859 RCL1Q9Y2P8 373 aaKnown RBP8.71□□□□□ -1.02
USP54-201ENST00000339859 NOTCH4Q99466 2003 aa8.71□□□□□ -1.02
USP54-201ENST00000339859 GIPP09681 153 aaPredicted RBP8.71□□□□□ -1.02
USP54-201ENST00000339859 ATF4P18848 351 aaPredicted RBP8.71□□□□□ -1.02
USP54-201ENST00000339859 KIR2DL2P43627 348 aaPredicted RBP8.71□□□□□ -1.02
USP54-201ENST00000339859 LINC01590Q5TEZ4 76 aa8.71□□□□□ -1.02
USP54-201ENST00000339859 ACY3Q96HD9 319 aa8.71□□□□□ -1.02
USP54-201ENST00000339859 SOX7Q9BT81 388 aa8.71□□□□□ -1.02
USP54-201ENST00000339859 RTN4RQ9BZR6 473 aa8.71□□□□□ -1.02
USP54-201ENST00000339859 TMEM231Q9H6L2 316 aa8.71□□□□□ -1.02
USP54-201ENST00000339859 HILPDAQ9Y5L2 63 aa8.71□□□□□ -1.02
USP54-201ENST00000339859 CTSDP07339 412 aaPredicted RBP8.7□□□□□ -1.02
USP54-201ENST00000339859 GZMKP49863 264 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 SNRPNP63162 240 aaKnown RBP8.7□□□□□ -1.02
USP54-201ENST00000339859 KNL1Q8NG31 2342 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 HARBI1Q96MB7 349 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 CLEC7AQ9BXN2 247 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 CNTNAP3Q9BZ76 1288 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 SERTAD4Q9NUC0 356 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 HTR1DP28221 377 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 RTN4RL2Q86UN3 420 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 NUP37Q8NFH4 326 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 ZNF418Q8TF45 676 aaPredicted RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms