RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PAX6P26367 422 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 IFITM3Q01628 133 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 IL13RA2Q14627 380 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 MIDNQ504T8 468 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 ACSM3Q53FZ2 586 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 MS4A15Q8N5U1 240 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 TMED9Q9BVK6 235 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 METTL9Q9H1A3 318 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 STUB1Q9UNE7 303 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 A0A075B6Q4 140 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 HSPB6O14558 160 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 MMP23AO75900 390 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 PTTG1O95997 202 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 SERPINA2P20848 420 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 GABRA5P31644 462 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 GPR50Q13585 617 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 ATXN7L3Q14CW9 347 aaPredicted RBP12.86□□□□□ -0.35
CLN3-201ENST00000333496 TAF9Q16594 264 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 NHLRC3Q5JS37 347 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 LDLRAD2Q5SZI1 272 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 OSR2Q8N2R0 312 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 ZBTB8BQ8NAP8 495 aaPredicted RBP12.86□□□□□ -0.35
CLN3-201ENST00000333496 CORO2AQ92828 525 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 CENPOQ9BU64 300 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 PPIL3Q9H2H8 161 aaKnown RBP12.86□□□□□ -0.35
CLN3-201ENST00000333496 ING3Q9NXR8 418 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 ST3GAL6Q9Y274 331 aa12.86□□□□□ -0.35
CLN3-201ENST00000333496 UBE2J1Q9Y385 318 aaPredicted RBP12.86□□□□□ -0.35
CLN3-201ENST00000333496 CSTBP04080 98 aaKnown RBP12.85□□□□□ -0.35
CLN3-201ENST00000333496 MAPK3P27361 379 aaPredicted RBP12.85□□□□□ -0.35
CLN3-201ENST00000333496 CFPP27918 469 aa12.85□□□□□ -0.35
CLN3-201ENST00000333496 RBM11P57052 281 aaKnown RBP12.85□□□□□ -0.35
CLN3-201ENST00000333496 RPS25P62851 125 aaKnown RBP12.85□□□□□ -0.35
CLN3-201ENST00000333496 RELBQ01201 579 aa12.85□□□□□ -0.35
CLN3-201ENST00000333496 KRBOX4Q5JUW0 171 aa12.85□□□□□ -0.35
CLN3-201ENST00000333496 LYSMD2Q8IV50 215 aa12.85□□□□□ -0.35
CLN3-201ENST00000333496 CDH26Q8IXH8 852 aa12.85□□□□□ -0.35
CLN3-201ENST00000333496 JAGN1Q8N5M9 183 aa12.85□□□□□ -0.35
CLN3-201ENST00000333496 BEND2Q8NDZ0 799 aa12.85□□□□□ -0.35
CLN3-201ENST00000333496 OR4D6Q8NGJ1 314 aa12.85□□□□□ -0.35
CLN3-201ENST00000333496 THRSPQ92748 146 aa12.85□□□□□ -0.35
CLN3-201ENST00000333496 MEGF9Q9H1U4 602 aa12.85□□□□□ -0.35
CLN3-201ENST00000333496 SSR3Q9UNL2 185 aa12.85□□□□□ -0.35
CLN3-201ENST00000333496 ODAMA1E959 279 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 FAM90A8PA6NJQ4 464 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 ODF3BA8MYP8 253 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 GEMIN2O14893 280 aaKnown RBP12.84□□□□□ -0.35
CLN3-201ENST00000333496 PAHP00439 452 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 FOXL1Q12952 345 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 SLC22A6Q4U2R8 563 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 PAN3Q58A45 887 aaKnown RBP12.84□□□□□ -0.35
CLN3-201ENST00000333496 SPANXN2Q5MJ10 180 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 ZNF626Q68DY1 528 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 BAIAP2L2Q6UXY1 529 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 LHFPL4Q7Z7J7 247 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 TRAPPC6BQ86SZ2 158 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 OR11H6Q8NGC7 330 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 TMEM203Q969S6 136 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 S100A13Q99584 98 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 CCDC32Q9BV29 185 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 DPAGT1Q9H3H5 408 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 MRPS28Q9Y2Q9 187 aaKnown RBP12.84□□□□□ -0.35
CLN3-201ENST00000333496 ZNF780AO75290 641 aaPredicted RBP12.84□□□□□ -0.35
CLN3-201ENST00000333496 OMGP23515 440 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 DEFA1P59665 94 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 DEFA3P59666 94 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 CD200R1LQ6Q8B3 271 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 GLIPR1L1Q6UWM5 242 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 TMEM91Q6ZNR0 172 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 LRRTM1Q86UE6 522 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 DYNAPQ8N1N2 210 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 OR13D1Q8NGV5 346 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 PLPPR1Q8TBJ4 325 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 DYRK2Q92630 601 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 RNF167Q9H6Y7 350 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 IFT22Q9H7X7 185 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 ABCB10Q9NRK6 738 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 TAS2R3Q9NYW6 316 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 C1RLQ9NZP8 487 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 SESN1Q9Y6P5 492 aa12.84□□□□□ -0.35
CLN3-201ENST00000333496 TRGV10A0A0A0MS01 117 aa12.83□□□□□ -0.36
CLN3-201ENST00000333496 GPR137BO60478 399 aa12.83□□□□□ -0.36
CLN3-201ENST00000333496 OR7C1O76099 320 aaPredicted RBP12.83□□□□□ -0.36
CLN3-201ENST00000333496 ARG1P05089 322 aa12.83□□□□□ -0.36
CLN3-201ENST00000333496 CGB3P0DN86 165 aa12.83□□□□□ -0.36
CLN3-201ENST00000333496 CGB7P0DN87 165 aa12.83□□□□□ -0.36
CLN3-201ENST00000333496 GDNFP39905 211 aa12.83□□□□□ -0.36
CLN3-201ENST00000333496 C17orf58Q2M2W7 97 aa12.83□□□□□ -0.36
CLN3-201ENST00000333496 RSBN1Q5VWQ0 802 aaPredicted RBP12.83□□□□□ -0.36
CLN3-201ENST00000333496 CEACAM19Q7Z692 300 aa12.83□□□□□ -0.36
CLN3-201ENST00000333496 NKAIN3Q8N8D7 197 aa12.83□□□□□ -0.36
CLN3-201ENST00000333496 SUMF2Q8NBJ7 301 aa12.83□□□□□ -0.36
CLN3-201ENST00000333496 SSX3Q99909 188 aa12.83□□□□□ -0.36
CLN3-201ENST00000333496 IGHV2-26A0A0B4J1V2 119 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 TRDV1A0A1B0GX56 115 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 UCHL1P09936 223 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 GTF2F2P13984 249 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 SRMP19623 302 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 MDKP21741 143 aaPredicted RBP12.82□□□□□ -0.36
CLN3-201ENST00000333496 CDK2P24941 298 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms