RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 NXPH3O95157 252 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 SYNGR4O95473 234 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 DUSP1P28562 367 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 CCKARP32238 428 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 UEVLDQ8IX04 471 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 ZNF775Q96BV0 537 aaPredicted RBP9.5□□□□□ -0.89
LSM3-201ENST00000306024 SDSLQ96GA7 329 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 OR10A2Q9H208 303 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 DLL3Q9NYJ7 618 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 KIAA1456Q9P272 454 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 HEATR5AQ86XA9 2040 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 MED13Q9UHV7 2174 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 FAM24AA6NFZ4 105 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 B4DEV8 164 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 MSTNO14793 375 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 ATXN7O15265 892 aaPredicted RBP9.5□□□□□ -0.89
LSM3-201ENST00000306024 SOCS1O15524 211 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 PHF1O43189 567 aaPredicted RBP9.5□□□□□ -0.89
LSM3-201ENST00000306024 VSIG8P0DPA2 414 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 HIST1H1DP16402 221 aaKnown RBP9.5□□□□□ -0.89
LSM3-201ENST00000306024 PIGPP57054 158 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 ZNF441Q8N8Z8 693 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 OR2AJ1Q8NGZ0 328 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 RPUSD4Q96CM3 377 aaKnown RBP9.5□□□□□ -0.89
LSM3-201ENST00000306024 FAM173AQ9BQD7 235 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 FAAP24Q9BTP7 215 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 VAMP8Q9BV40 100 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 SLC5A6Q9Y289 635 aa9.5□□□□□ -0.89
LSM3-201ENST00000306024 COA3Q9Y2R0 106 aaPredicted RBP9.5□□□□□ -0.89
LSM3-201ENST00000306024 ATP6V0CP27449 155 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 TDGF1P3P51864 188 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 TLE1Q04724 770 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 TESK1Q15569 626 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 WIPI1Q5MNZ9 446 aaPredicted RBP9.49□□□□□ -0.89
LSM3-201ENST00000306024 ZNF468Q5VIY5 522 aaPredicted RBP9.49□□□□□ -0.89
LSM3-201ENST00000306024 AADACL3Q5VUY0 350 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 BTNL3Q6UXE8 466 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 SLC35E3Q7Z769 313 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 ATG4DQ86TL0 474 aaPredicted RBP9.49□□□□□ -0.89
LSM3-201ENST00000306024 ABHD5Q8WTS1 349 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 RBMXL1Q96E39 390 aaKnown RBP9.49□□□□□ -0.89
LSM3-201ENST00000306024 MAGT1Q9H0U3 335 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 DEFB127Q9H1M4 99 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 ABHD16AO95870 558 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 MT-ATP6P00846 226 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 TK1P04183 234 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 GUSBP08236 651 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 LINC00614P0C842 121 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 ZNF728P0DKX0 622 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 EPHA1P21709 976 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 OR10J1P30954 320 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 DSCR4P56555 118 aaPredicted RBP9.49□□□□□ -0.89
LSM3-201ENST00000306024 HIST1H3AP68431 136 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 SRSF6Q13247 344 aaKnown RBP9.49□□□□□ -0.89
LSM3-201ENST00000306024 CLN3Q13286 438 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 COL5A1-AS1Q5SY13 56 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 RTN4RQ9BZR6 473 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 R4GMQ9 66 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 IGF2RP11717 2491 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 A0A087WWC5 75 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 OR4A8P0C604 315 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 COL10A1Q03692 680 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 OR52N5Q8NH56 324 aa9.49□□□□□ -0.89
LSM3-201ENST00000306024 GNPNAT1Q96EK6 184 aaPredicted RBP9.49□□□□□ -0.89
LSM3-201ENST00000306024 FOXD3Q9UJU5 478 aaPredicted RBP9.49□□□□□ -0.89
LSM3-201ENST00000306024 SRP19P09132 144 aaKnown RBP9.48□□□□□ -0.89
LSM3-201ENST00000306024 CLRN1P58418 232 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 CCL20P78556 96 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 PNRC1Q12796 327 aaPredicted RBP9.48□□□□□ -0.89
LSM3-201ENST00000306024 ZNF766Q5HY98 468 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 SMIM15Q7Z3B0 74 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 ZNF695Q8IW36 515 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 OR13G1Q8NGZ3 307 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 OR4X1Q8NH49 305 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 HOXB13Q92826 284 aaPredicted RBP9.48□□□□□ -0.89
LSM3-201ENST00000306024 ADGRG7Q96K78 797 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 TSPAN32Q96QS1 320 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 NAGKQ9UJ70 344 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 LAMA1P25391 3075 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 PROB1E7EW31 1015 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 LMX1BO60663 402 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 LYPD3O95274 346 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 HLA-HP01893 362 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 NKX2-1P43699 371 aaPredicted RBP9.48□□□□□ -0.89
LSM3-201ENST00000306024 ACKR1Q16570 336 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 ZNF787Q6DD87 383 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 ABLIM2Q6H8Q1 611 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 KCNIP4Q6PIL6 250 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 H1FNTQ75WM6 255 aaPredicted RBP9.48□□□□□ -0.89
LSM3-201ENST00000306024 OR2M3Q8NG83 312 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 RTN4IP1Q8WWV3 396 aaPredicted RBP9.48□□□□□ -0.89
LSM3-201ENST00000306024 TMEM230Q96A57 120 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 SSSCA1O60232 199 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 CYB5R3P00387 301 aaPredicted RBP9.48□□□□□ -0.89
LSM3-201ENST00000306024 GALR1P47211 349 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 TFPI2P48307 235 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 CSNK1A1P48729 337 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 ZNF92Q03936 586 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 MPV17LQ2QL34 196 aa9.48□□□□□ -0.89
LSM3-201ENST00000306024 ACOT6Q3I5F7 207 aaPredicted RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms