RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 HMGN2P46Q86SG4 172 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 RNASEH2CQ8TDP1 164 aaKnown RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 TMEM56Q96MV1 263 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 FOXC2Q99958 501 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 CHST5Q9GZS9 411 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 RNF39Q9H2S5 420 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 FAM206AQ9NX38 181 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 OR5V1Q9UGF6 321 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 A0A1W2PN81 502 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 RBP4P02753 201 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 CHRNA7P36544 502 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 CCL11P51671 97 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 Q5PR19 223 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 MOB3BQ86TA1 216 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 PLPP7Q8NBV4 271 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 VN1R2Q8NFZ6 395 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 TNFRSF13CQ96RJ3 184 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 HSD17B10Q99714 261 aaKnown RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 GABRG3Q99928 467 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 KCNMB2Q9Y691 235 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 ANKRD36A6QL64 1941 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 SCN10AQ9Y5Y9 1956 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 A0A1W2PPC4 97 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 H0Y980 276 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 P2RY10O00398 339 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 F11P03951 625 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 IL4P05112 153 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 OR8G3PP0DMU2 310 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 LIM2P55344 173 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 CTAG1AP78358 180 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 GAMTQ14353 236 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF385BQ569K4 471 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 AMIGO3Q86WK7 504 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 PTPMT1Q8WUK0 201 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 MEGF10Q96KG7 1140 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 APOOQ9BUR5 198 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 CHST2Q9Y4C5 530 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 TBL2Q9Y4P3 447 aaKnown RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 ERVH48-1M5A8F1 160 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 CLEC2LP0C7M8 214 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 RCC1P18754 421 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 MEF2BQ02080 365 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 TMEM267Q0VDI3 215 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 SQSTM1Q13501 440 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 GABRA6Q16445 453 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 CHST14Q8NCH0 376 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 SIP14410 1827 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 TRGV10A0A0A0MS01 117 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 HS3ST1O14792 307 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 SS18L1O75177 396 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 ZFPL1O95159 310 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 NME2P22392 152 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 FAM209BQ5JX69 171 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 RNASEKQ6P5S7 137 aaKnown RBP4.66□□□□□ -1.66
SCN1A-201ENST00000303395 CLEC18BQ6UXF7 455 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 TMEM179BQ7Z7N9 219 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 NECAP1Q8NC96 275 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 OR5AU1Q8NGC0 362 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 PARD6AQ9NPB6 346 aa4.66□□□□□ -1.66
SCN1A-201ENST00000303395 TRAV20A0A0B4J274 112 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 LOC105371267A0A1B0GV96 52 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 SSSCA1O60232 199 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 TMIGD3P0DMS9 266 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-201ENST00000303395 CEACAM3P40198 252 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 CLEC9AQ6UXN8 241 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 ZFP41Q8N8Y5 198 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 OR11G2Q8NGC1 345 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 OR5A1Q8NGJ0 315 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 OR2V1Q8NHB1 315 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 Q8WTZ3 238 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 SLAMF6Q96DU3 332 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 TMEM38BQ9NVV0 291 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 DOK5Q9P104 306 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 GAGE10A6NGK3 116 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 C9orf172C9J069 976 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF688P0C7X2 276 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 PITX1P78337 314 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-201ENST00000303395 POU3F1Q03052 451 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-201ENST00000303395 FAM166AQ6J272 317 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 C16orf92Q96LL3 132 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 SLC25A33Q9BSK2 321 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 IFITM10A6NMD0 228 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 CDX4O14627 284 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-201ENST00000303395 UTS2O95399 124 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 GLIPR1P48060 266 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 OR1C1Q15619 314 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 C1orf53Q5VUE5 145 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 OR4S2Q8NH73 311 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 FAM3CQ92520 227 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 SCAMP4Q969E2 229 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 TECRQ9NZ01 308 aaKnown RBP4.65□□□□□ -1.66
SCN1A-201ENST00000303395 WNT6Q9Y6F9 365 aa4.65□□□□□ -1.66
SCN1A-201ENST00000303395 PLXNB1O43157 2135 aa4.65□□□□□ -1.67
SCN1A-201ENST00000303395 A0A1B0GX78 115 aa4.65□□□□□ -1.67
SCN1A-201ENST00000303395 HYAL3O43820 417 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-201ENST00000303395 CXorf1O96002 111 aa4.65□□□□□ -1.67
SCN1A-201ENST00000303395 ZBTB25P24278 435 aa4.65□□□□□ -1.67
SCN1A-201ENST00000303395 RPS26P62854 115 aaKnown RBP4.65□□□□□ -1.67
SCN1A-201ENST00000303395 RPS26P11Q5JNZ5 115 aaPredicted RBP4.65□□□□□ -1.67
SCN1A-201ENST00000303395 STUMQ69YW2 141 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms