RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 CCL8P80075 99 aa10.04□□□□□ -0.8
USP53-201ENST00000274030 IL24Q13007 206 aa10.04□□□□□ -0.8
USP53-201ENST00000274030 RPEL1Q2QD12 228 aa10.04□□□□□ -0.8
USP53-201ENST00000274030 SNRNP200O75643 2136 aaKnown RBP10.04□□□□□ -0.8
USP53-201ENST00000274030 C21orf140B9A014 251 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 HLA-DRB3P79483 266 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 NSUN5P2Q63ZY6 315 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 ZNF880Q6PDB4 577 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 SLC26A10Q8NG04 563 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 GRAMD2BQ96HH9 432 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 GLRX2Q9NS18 164 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 OR11H7Q8NGC8 314 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 ZNF596Q8TC21 504 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 RNF133Q8WVZ7 376 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 DUSP15Q9H1R2 295 aaPredicted RBP10.03□□□□□ -0.8
USP53-201ENST00000274030 LPAR3Q9UBY5 353 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 VDAC1P21796 283 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 NANOS3P60323 173 aaKnown RBP10.03□□□□□ -0.8
USP53-201ENST00000274030 HARBI1Q96MB7 349 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 LINC00052Q96N35 136 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 CES1P1Q9UKY3 287 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 STRCQ7RTU9 1775 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 TRAV20A0A0B4J274 112 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 A0A0J9YW62 118 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 PPP1CCP36873 323 aaKnown RBP10.03□□□□□ -0.8
USP53-201ENST00000274030 GTF2H5Q6ZYL4 71 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 WFDC3Q8IUB2 231 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 SLC22A18ASQ8N1D0 253 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 SLC7A10Q9NS82 523 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 DCAF16Q9NXF7 216 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 RNF24Q9Y225 148 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 SIRT4Q9Y6E7 314 aaPredicted RBP10.03□□□□□ -0.8
USP53-201ENST00000274030 C11orf94C9JXX5 98 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 J3QT63 122 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 PSG2P11465 335 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 FBXW9Q5XUX1 488 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 ZNF764Q96H86 408 aaPredicted RBP10.03□□□□□ -0.8
USP53-201ENST00000274030 ATP5SQ99766 215 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 TTTY12Q9BZ98 90 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 RCC2Q9P258 522 aaKnown RBP10.03□□□□□ -0.8
USP53-201ENST00000274030 BCORQ6W2J9 1755 aa10.03□□□□□ -0.8
USP53-201ENST00000274030 PAPPAQ13219 1627 aa10.02□□□□□ -0.8
USP53-201ENST00000274030 PLA2G10O15496 165 aa10.02□□□□□ -0.8
USP53-201ENST00000274030 C8orf82Q6P1X6 216 aaPredicted RBP10.02□□□□□ -0.8
USP53-201ENST00000274030 C5orf17Q8NAS9 161 aa10.02□□□□□ -0.8
USP53-201ENST00000274030 OR4D10Q8NGI6 311 aa10.02□□□□□ -0.8
USP53-201ENST00000274030 RASL11BQ9BPW5 248 aa10.02□□□□□ -0.8
USP53-201ENST00000274030 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.02□□□□□ -0.81
USP53-201ENST00000274030 SPTBP11277 2137 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 IGKV1-8A0A0C4DH67 115 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 CCL21O00585 134 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 TTRP02766 147 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 RPL29P47914 159 aaKnown RBP10.02□□□□□ -0.81
USP53-201ENST00000274030 BSXQ3C1V8 233 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 VSTM2AQ8TAG5 236 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 RGP1Q92546 391 aaPredicted RBP10.02□□□□□ -0.81
USP53-201ENST00000274030 PCGF1Q9BSM1 259 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 NHSL1Q5SYE7 1610 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 HMSDA8MTL9 139 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 RGS13O14921 159 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 PTBP3O95758 552 aaKnown RBP10.02□□□□□ -0.81
USP53-201ENST00000274030 GZMHP20718 246 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 AWAT1Q58HT5 328 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 ADAMTS17Q8TE56 1095 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 ADTRPQ96IZ2 230 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 TMEM204Q9BSN7 226 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 COL18A1P39060 1754 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 MDC1Q14676 2089 aaKnown RBP10.02□□□□□ -0.81
USP53-201ENST00000274030 FAM87AP0C7U9 286 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 BRS3P32247 399 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 ATP6V1FQ16864 119 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 NCMAPQ5T1S8 102 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 CBLN2Q8IUK8 224 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 ZNF665Q9H7R5 613 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 COLQQ9Y215 455 aaPredicted RBP10.02□□□□□ -0.81
USP53-201ENST00000274030 CEP250Q9BV73 2442 aa10.02□□□□□ -0.81
USP53-201ENST00000274030 TEX50A0A1B0GTY4 177 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 WNT5AP41221 380 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 OR8I2Q8N0Y5 310 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 LILRB1Q8NHL6 650 aaPredicted RBP10.01□□□□□ -0.81
USP53-201ENST00000274030 MS4A3Q96HJ5 214 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 LPAR5Q9H1C0 372 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 ASCL3Q9NQ33 180 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 SPTBN2O15020 2390 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 C16orf97H3BN30 126 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 ORM1P02763 201 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 FAM157CP0CG43 387 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 RPL7P18124 248 aaKnown RBP10.01□□□□□ -0.81
USP53-201ENST00000274030 P2RY1P47900 373 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 ECSCRQ19T08 205 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 IQCJQ1A5X6 159 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 MRPL54Q6P161 138 aaKnown RBP10.01□□□□□ -0.81
USP53-201ENST00000274030 ZNF501Q96CX3 271 aaPredicted RBP10.01□□□□□ -0.81
USP53-201ENST00000274030 TMSB15BA0A087X1C1 80 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 A0A1W2PP11 408 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 VWA1Q6PCB0 445 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 SLC25A42Q86VD7 318 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 OR4X1Q8NH49 305 aa10.01□□□□□ -0.81
USP53-201ENST00000274030 TECRQ9NZ01 308 aaKnown RBP10.01□□□□□ -0.81
USP53-201ENST00000274030 OPN4Q9UHM6 478 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms