RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 PRSS54Q6PEW0 395 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 ATRAIDQ6UW56 229 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 MRGPRGQ86SM5 289 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 SUMF2Q8NBJ7 301 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 SNRNP40Q96DI7 357 aaKnown RBP13.01□□□□□ -0.33
SF3B4-201ENST00000271628 CXXC4Q9H2H0 198 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 TUBD1Q9UJT1 453 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 ZNF835Q9Y2P0 537 aa13.01□□□□□ -0.33
SF3B4-201ENST00000271628 CEP295Q9C0D2 2601 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 KIR2DS1A0A191URI9 304 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 SLC34A2O95436 690 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 PET100P0DJ07 73 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 PI3P19957 117 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 BMP5P22003 454 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 DUSP1P28562 367 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 KIR2DS4P43632 304 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 SUPT4H1P63272 117 aaKnown RBP13□□□□□ -0.33
SF3B4-201ENST00000271628 RBPJQ06330 500 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 KIR2DS1Q14954 304 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 SGPP2Q8IWX5 399 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 NRIP2Q9BQI9 281 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 Q9N2K0 584 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 TINAGQ9UJW2 476 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 DNASE2O00115 360 aaPredicted RBP13□□□□□ -0.33
SF3B4-201ENST00000271628 DEGS1O15121 323 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 KNG1P01042 644 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 GRPP07492 148 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 CTXN2P0C2S0 81 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 FCGR2CP31995 323 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 ZNF83P51522 516 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 SLC9A3R2Q15599 337 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 FIP1L1Q6UN15 594 aaKnown RBP13□□□□□ -0.33
SF3B4-201ENST00000271628 OR5T2Q8NGG2 359 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 OR1S2Q8NGQ3 325 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 NARS2Q96I59 477 aaKnown RBP13□□□□□ -0.33
SF3B4-201ENST00000271628 AQP10Q96PS8 301 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 TREM2Q9NZC2 230 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 DNAJB11Q9UBS4 358 aa13□□□□□ -0.33
SF3B4-201ENST00000271628 H0YIZ8 118 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 H0YL77 283 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 H7C1Q1 480 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 M0R1B8 84 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 HS3ST1O14792 307 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 MLNRO43193 412 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 ATG12O94817 140 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 ZNF44P15621 663 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 MDH2P40926 338 aaKnown RBP12.99□□□□□ -0.33
SF3B4-201ENST00000271628 UCP3P55916 312 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 ZNF146Q15072 292 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 SPIN3Q5JUX0 258 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 C2orf50Q96LR7 162 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 NKX6-2Q9C056 277 aaPredicted RBP12.99□□□□□ -0.33
SF3B4-201ENST00000271628 METTL8Q9H825 291 aaKnown RBP12.99□□□□□ -0.33
SF3B4-201ENST00000271628 CYTL1Q9NRR1 136 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 ELOVL5Q9NYP7 299 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 ATP23Q9Y6H3 246 aa12.99□□□□□ -0.33
SF3B4-201ENST00000271628 TRBV6-6A0A0A6YYG2 114 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 TRAV24A0A0B4J272 114 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 TMEM218A2RU14 115 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 NUPL2O15504 423 aaKnown RBP12.98□□□□□ -0.33
SF3B4-201ENST00000271628 ADAP1O75689 374 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 NXPH2O95156 264 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 FAM87AP0C7U9 286 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 ZNF728P0DKX0 622 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 Q6ZPA2 131 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 RRNAD1Q96FB5 475 aaKnown RBP12.98□□□□□ -0.33
SF3B4-201ENST00000271628 LIME1Q9H400 295 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 ASF1BQ9NVP2 202 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 KCNIP3Q9Y2W7 256 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 A0A0G2JNJ9 132 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 A0A1B0GWJ7 208 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 TRDCB7Z8K6 153 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 HSPB6O14558 160 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 SH2D1BO14796 132 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 KCNAB3O43448 404 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 TSPAN9O75954 239 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 IFNA2P01563 188 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 RPS2P15880 293 aaKnown RBP12.98□□□□□ -0.33
SF3B4-201ENST00000271628 GLRXP35754 106 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 ANKRD55Q3KP44 614 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 Q6P435 159 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 POC1AQ8NBT0 407 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 CLRN3Q8NCR9 226 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 RDH5Q92781 318 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 ARL11Q969Q4 196 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 MOB3AQ96BX8 217 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 SYT3Q9BQG1 590 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 TLNRD1Q9H1K6 362 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 C1orf123Q9NWV4 160 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 Q9UFV3 132 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 RAXQ9Y2V3 346 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 MEMO1Q9Y316 297 aa12.98□□□□□ -0.33
SF3B4-201ENST00000271628 HEATR1Q9H583 2144 aaKnown RBP12.97□□□□□ -0.33
SF3B4-201ENST00000271628 CRYM-AS1A6NIL9 109 aa12.97□□□□□ -0.33
SF3B4-201ENST00000271628 ATP6V1G2-DDX39BF2Z307 99 aa12.97□□□□□ -0.33
SF3B4-201ENST00000271628 ABCD4O14678 606 aa12.97□□□□□ -0.33
SF3B4-201ENST00000271628 DIRAS3O95661 229 aa12.97□□□□□ -0.33
SF3B4-201ENST00000271628 TK1P04183 234 aa12.97□□□□□ -0.33
SF3B4-201ENST00000271628 HERV-K104P61576 105 aa12.97□□□□□ -0.33
SF3B4-201ENST00000271628 EIF5AP63241 154 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms