RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CDC14BO60729 498 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 ZNF506Q5JVG8 444 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 HEXA-AS1Q9H8Q6 139 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 LTB4R2Q9NPC1 389 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 MPV17LQ2QL34 196 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 OR10AC1Q8NH08 325 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 MRGPRX3Q96LB0 322 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 MYO7AQ13402 2215 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 FCGR3AP08637 254 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 FOLR2P14207 255 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 PRSS36Q5K4E3 855 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 TCF24Q7RTU0 167 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 OR11G2Q8NGC1 345 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 MOGAT3Q86VF5 341 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 A0A1W2PR48 441 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 RELQ04864 619 aaPredicted RBP12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 SURF2Q15527 256 aaPredicted RBP12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 OR1L8Q8NGR8 309 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 C10orf35Q96D05 121 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 AKAP6Q13023 2319 aa12.37□□□□□ -0.43
CCDC88A-201ENST00000263630 LDLRAD3Q86YD5 345 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 FOXC2Q99958 501 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 BCL2L10Q9HD36 194 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 CDAP32320 146 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 NUDT8Q8WV74 236 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 FGF14Q92915 247 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 GMPPAQ96IJ6 420 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 WNT5BQ9H1J7 359 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 STARD10Q9Y365 291 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 CACNA1DQ01668 2161 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 ARG1P05089 322 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 GUCA2AQ02747 115 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 OR13H1Q8NG92 308 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 PAXXQ9BUH6 204 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 MTFP1Q9UDX5 166 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 EPPINO95925 133 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 SLC25A34Q6PIV7 304 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 Q6ZSR9 355 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 GLCCI1Q86VQ1 547 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 ZBTB34Q8NCN2 500 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 GLRX2Q9NS18 164 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 ZNF137PP52743 207 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 RTN4RL1Q86UN2 441 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 OR5M9Q8NGP3 310 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 YIPF6Q96EC8 236 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 PLEKHB1Q9UF11 243 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 ABLIM3O94929 683 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 LEPROTL1O95214 131 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 ZNF880Q6PDB4 577 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 LRRC29Q8WV35 223 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 KCNAB3O43448 404 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 LIPFP07098 398 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 CD3EP07766 207 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 MRPS11P82912 194 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 PLPPR2Q96GM1 343 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 PEF1Q9UBV8 284 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 ECM29Q5VYK3 1845 aa12.36□□□□□ -0.43
CCDC88A-201ENST00000263630 HLA-DRB1P01911 266 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 MFAP2P55001 183 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 SUMO2P61956 95 aaKnown RBP12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 OR4A5Q8NH83 315 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 GPR35Q9HC97 309 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 KMT2EQ8IZD2 1858 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 HKR1P10072 659 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 DEGS2Q6QHC5 323 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 MUC20Q8N307 709 aaPredicted RBP12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 PRDM14Q9GZV8 571 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 C9orf172C9J069 976 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 HLA-DQA1P01909 254 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 C4orf45Q96LM5 186 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 A0A1B0GU03 582 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 GFYI3L273 518 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 CTSDP07339 412 aaPredicted RBP12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 WDR34Q96EX3 536 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 CDK2AP2O75956 126 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 MPC1Q9Y5U8 109 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 HCFC2Q9Y5Z7 792 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 MTCH2Q9Y6C9 303 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 CTXND1A0A1B0GTU2 59 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 WFDC3Q8IUB2 231 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 MRGPRDQ8TDS7 321 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 TDRD15B5MCY1 1934 aaKnown RBP12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 VDAC1P21796 283 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 TSPOP30536 169 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 NEUROG1Q92886 237 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 LINC00862A6NCI5 91 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 SLC25A35Q3KQZ1 300 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 HARBI1Q96MB7 349 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 CLN8Q9UBY8 286 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 TIAM2Q8IVF5 1701 aa12.35□□□□□ -0.43
CCDC88A-201ENST00000263630 DOPEY2Q9Y3R5 2298 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 NPFFO15130 113 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 DPTQ07507 201 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 ST3GAL2Q16842 350 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 FER1L5A0AVI2 2057 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 DLEU7Q6UYE1 221 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 TMEM56-RWDD3S4R434 201 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 YLPM1P49750 1951 aaKnown RBP12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 C3orf80F5H4A9 247 aa12.34□□□□□ -0.43
CCDC88A-201ENST00000263630 LOXL3P58215 753 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms