RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 VAX2Q9UIW0 290 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 A0A0U1RQV5 110 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 A0A1W2PNV4 684 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 NMBP08949 121 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 HNRNPA3P51991 378 aaKnown RBP9.42□□□□□ -0.9
CD44-201ENST00000263398 PIGYQ3MUY2 71 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 VSTM2AQ8TAG5 236 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 ZNF501Q96CX3 271 aaPredicted RBP9.42□□□□□ -0.9
CD44-201ENST00000263398 DUSP15Q9H1R2 295 aaPredicted RBP9.42□□□□□ -0.9
CD44-201ENST00000263398 PARD6AQ9NPB6 346 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 PRSS50Q9UI38 385 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 A0A1B0GU03 582 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 GATCO43716 136 aaKnown RBP9.41□□□□□ -0.9
CD44-201ENST00000263398 TSPAN2O60636 221 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 SLC25A5P05141 298 aaKnown RBP9.41□□□□□ -0.9
CD44-201ENST00000263398 DAOP14920 347 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 CXCL2P19875 107 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 BCL3P20749 454 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 ZBTB34Q8NCN2 500 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 SLC7A10Q9NS82 523 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 KIAA1324LA8MWY0 1029 aaPredicted RBP9.41□□□□□ -0.9
CD44-201ENST00000263398 C21orf140B9A014 251 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 PMELP40967 661 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 SPINK9Q5DT21 86 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 FAM78BQ5VT40 261 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 FNDC7Q5VTL7 733 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 LYPD8Q6UX82 237 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 OR4F17Q8NGA8 305 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 OR4A4PQ8NGN8 299 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 SEBOXQ9HB31 216 aaPredicted RBP9.41□□□□□ -0.9
CD44-201ENST00000263398 TMEM167BQ9NRX6 74 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 RPL36A-HNRNPH2H7BZ11 118 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 UPK3AO75631 287 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 GYPAP02724 150 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 RBP4P02753 201 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 PMS2P11Q13670 270 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.41□□□□□ -0.9
CD44-201ENST00000263398 DCAF12L2Q5VW00 463 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 MRGPRGQ86SM5 289 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 OR1L4Q8NGR5 311 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 CCL17Q92583 94 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 SLC25A38Q96DW6 304 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 MS4A7Q9GZW8 240 aaPredicted RBP9.41□□□□□ -0.9
CD44-201ENST00000263398 SLC26A1Q9H2B4 701 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 TINAGQ9UJW2 476 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 PARP14Q460N5 1801 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 ELOA3CA0A087WX78 387 aaPredicted RBP9.41□□□□□ -0.9
CD44-201ENST00000263398 LRRC3CA6NJW4 275 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 HAND1O96004 215 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 MAGEA5P43359 124 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 SPCS3P61009 180 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 C1orf100Q5SVJ3 147 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 DHRS7BQ6IAN0 325 aaPredicted RBP9.41□□□□□ -0.9
CD44-201ENST00000263398 WDR73Q6P4I2 378 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 NHLRC2Q8NBF2 726 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 MRGPRFQ96AM1 343 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 MISP3Q96FF7 219 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 SIRT7Q9NRC8 400 aa9.41□□□□□ -0.9
CD44-201ENST00000263398 SPINK4O60575 86 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 TFF2Q03403 129 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 HFEQ30201 348 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 COX19Q49B96 90 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 HES3Q5TGS1 186 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 AMELYQ99218 206 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 RNF2Q99496 336 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 SMDT1Q9H4I9 107 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 LYRM2Q9NU23 88 aaPredicted RBP9.4□□□□□ -0.9
CD44-201ENST00000263398 OR1A1Q9P1Q5 309 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 A0A0J9YW62 118 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 J3QR89 54 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 IL9P15248 144 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 SOX8P57073 446 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 SPEM2Q0P670 501 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 C19orf35Q6ZS72 473 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 SLC16A13Q7RTY0 426 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 ANAPC16Q96DE5 110 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 LPAR5Q9H1C0 372 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 SMOC1Q9H4F8 434 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 FSCN3Q9NQT6 498 aa9.4□□□□□ -0.9
CD44-201ENST00000263398 C11orf94C9JXX5 98 aa9.4□□□□□ -0.91
CD44-201ENST00000263398 ATP6V0CP27449 155 aa9.4□□□□□ -0.91
CD44-201ENST00000263398 ZNF260Q3ZCT1 412 aa9.4□□□□□ -0.91
CD44-201ENST00000263398 OR10G8Q8NGN5 311 aa9.4□□□□□ -0.91
CD44-201ENST00000263398 RSRP1Q9BUV0 290 aa9.4□□□□□ -0.91
CD44-201ENST00000263398 KCNE5Q9UJ90 142 aa9.4□□□□□ -0.91
CD44-201ENST00000263398 IGHV3-13P01766 116 aa9.39□□□□□ -0.91
CD44-201ENST00000263398 IGHV3-7P01780 117 aa9.39□□□□□ -0.91
CD44-201ENST00000263398 GAPDHP04406 335 aaKnown RBP9.39□□□□□ -0.91
CD44-201ENST00000263398 CRYBA1P05813 215 aa9.39□□□□□ -0.91
CD44-201ENST00000263398 SMIM10L1P0DMW3 83 aa9.39□□□□□ -0.91
CD44-201ENST00000263398 DLK1P80370 383 aa9.39□□□□□ -0.91
CD44-201ENST00000263398 TIPARPQ7Z3E1 657 aaKnown RBP9.39□□□□□ -0.91
CD44-201ENST00000263398 LINC00596Q86U02 117 aa9.39□□□□□ -0.91
CD44-201ENST00000263398 SMIM10Q96HG1 83 aa9.39□□□□□ -0.91
CD44-201ENST00000263398 TECRQ9NZ01 308 aaKnown RBP9.39□□□□□ -0.91
CD44-201ENST00000263398 PTPRFP10586 1907 aa9.39□□□□□ -0.91
CD44-201ENST00000263398 IGLV1-36A0A0B4J1U3 117 aa9.39□□□□□ -0.91
CD44-201ENST00000263398 ZNF785A8K8V0 405 aa9.39□□□□□ -0.91
CD44-201ENST00000263398 ISG15P05161 165 aa9.39□□□□□ -0.91
CD44-201ENST00000263398 SMIM6P0DI80 62 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms