RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 GALR1P47211 349 aa12.4□□□□□ -0.43
SDC1-201ENST00000254351 DBX2Q6ZNG2 339 aa12.4□□□□□ -0.43
SDC1-201ENST00000254351 OR10G3Q8NGC4 313 aa12.4□□□□□ -0.43
SDC1-201ENST00000254351 OR13D1Q8NGV5 346 aa12.4□□□□□ -0.43
SDC1-201ENST00000254351 PIGCQ92535 297 aa12.4□□□□□ -0.43
SDC1-201ENST00000254351 ZNF286AQ9HBT8 521 aa12.4□□□□□ -0.43
SDC1-201ENST00000254351 CCL28Q9NRJ3 127 aa12.4□□□□□ -0.43
SDC1-201ENST00000254351 TRAV39A0A0B4J263 110 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 LRRC3CA6NJW4 275 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 TRDCB7Z8K6 153 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 TRAF3IP2O43734 574 aaPredicted RBP12.39□□□□□ -0.43
SDC1-201ENST00000254351 FGF5P12034 268 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 NPBWR2P48146 333 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 C17orf67Q0P5P2 114 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 TMPRSS7Q7RTY8 843 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 OR1L3Q8NH93 324 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 ZNF385AQ96PM9 386 aaKnown RBP12.39□□□□□ -0.43
SDC1-201ENST00000254351 MOB1AQ9H8S9 216 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 SDF2L1Q9HCN8 221 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 ALKBH4Q9NXW9 302 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 ABCA7Q8IZY2 2146 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 IGKV1D-13A0A0B4J2D9 117 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 SPTY2D1-AS1A0A0U1RR47 76 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 A0A1B0GWJ7 208 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 MKRN2OSH3BPM6 223 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 DVL1O14640 695 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 IGKV1-13P0DP09 117 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 HERPUD1Q15011 391 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 ZNF726P1Q15940 193 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 TMEM256Q8N2U0 113 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 SCGB1C1Q8TD33 95 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 SEMA5BQ9P283 1151 aa12.39□□□□□ -0.43
SDC1-201ENST00000254351 CPAMD8Q8IZJ3 1885 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 THADAQ6YHU6 1953 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 A0A0G2JRQ6 117 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 A0A1W2PQD3 144 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 H7BYZ3 331 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 CCNOP22674 350 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 OR1D5P58170 312 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 DMRTA1Q5VZB9 504 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 OR8G2PQ6IF36 304 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 IL1F10Q8WWZ1 152 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 FAM131CQ96AQ9 280 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 RBMXL1Q96E39 390 aaKnown RBP12.38□□□□□ -0.43
SDC1-201ENST00000254351 NOL4LQ96MY1 436 aaPredicted RBP12.38□□□□□ -0.43
SDC1-201ENST00000254351 UCN2Q96RP3 112 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 UCK1Q9HA47 277 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 DOCK7Q96N67 2140 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 GRIFINA4D1Z8 144 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 M0R143 59 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 IGFBP4P22692 258 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 ECI1P42126 302 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 ZNF133P52736 654 aaPredicted RBP12.38□□□□□ -0.43
SDC1-201ENST00000254351 HLA-BQ31612 363 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 SLC16A14Q7RTX9 510 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 CCDC71LQ8N9Z2 235 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 GNPNAT1Q96EK6 184 aaPredicted RBP12.38□□□□□ -0.43
SDC1-201ENST00000254351 OR5B12Q96R08 314 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 TMEM208Q9BTX3 173 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 TMEM222Q9H0R3 208 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 IL36RNQ9UBH0 155 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 GOLT1BQ9Y3E0 138 aa12.38□□□□□ -0.43
SDC1-201ENST00000254351 ZNF816-ZNF321PA0A0X1KG74 233 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 CEACAM1P13688 526 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 EDN3P14138 238 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 NUBP1P53384 320 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 PMP22Q01453 160 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 RSPO1Q2MKA7 263 aaPredicted RBP12.37□□□□□ -0.43
SDC1-201ENST00000254351 ZNF468Q5VIY5 522 aaPredicted RBP12.37□□□□□ -0.43
SDC1-201ENST00000254351 SELENOHQ8IZQ5 122 aaKnown RBP12.37□□□□□ -0.43
SDC1-201ENST00000254351 SMRP1Q8NCR6 262 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 SSC4DQ8WTU2 575 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 RAB24Q969Q5 203 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 TM2D1Q9BX74 207 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 SLC25A22Q9H936 323 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 Q9N2K0 584 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 PRSS50Q9UI38 385 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 IGKV3D-11A0A0A0MRZ8 115 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 TRBV11-1A0A0K0K1C0 115 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 A0A1B0GW64 132 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 ANKUB1A6NFN9 424 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 NUPR1O60356 82 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 TRAPPC6AO75865 159 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 OPN1MWP04001 364 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 IGHV4-34P06331 123 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 OPN1MW2P0DN77 364 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 OPN1MW3P0DN78 364 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 PAM16Q9Y3D7 125 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 RRP8O43159 456 aaKnown RBP12.37□□□□□ -0.43
SDC1-201ENST00000254351 ZNF737O75373 536 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 TAS2R30P59541 319 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 ZP4Q12836 540 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 EXT1Q16394 746 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 ZNF774Q6NX45 483 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 MOB3AQ96BX8 217 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 HS3ST6Q96QI5 342 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 ATP5SQ99766 215 aa12.37□□□□□ -0.43
SDC1-201ENST00000254351 A0A1W2PNV4 684 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 PGPEP1LA6NFU8 196 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 HBE1P02100 147 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms